A busy urban street at night with illuminated billboards and a prominent Epson sign.

Search Boutique Hotels in Shinjuku

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check availability on Shinjuku Boutique Hotels

This weekend
Next weekend

Our top choices for Shinjuku boutique hotels

1. Hotel Gracery Shinjuku

Hotel Gracery Shinjuku
4.0 star property
Shinjuku
9.0 out of 10, Wonderful, (5,599 reviews)
"Awesome place, would stay again"
United States
matthew
The price is ฿5,923
฿7,167 total
30 Nov - 1 Dec
Hotel Gracery Shinjuku

2. Tokyo Bay Shiomi Prince Hotel

Tokyo Bay Shiomi Prince Hotel
4.0 star property
10.9 km from Shinjuku
9.6 out of 10, Exceptional, (6,262 reviews)
"Great rooms and amenities."
Canada
Olga
The price is ฿5,857
฿7,280 total
30 Nov - 1 Dec
Tokyo Bay Shiomi Prince Hotel

3. THE KNOT TOKYO Shinjuku

THE KNOT TOKYO Shinjuku
3.5 star property
Shinjuku
9.0 out of 10, Wonderful, (2,463 reviews)
"It was a great stay!"
United States
Robert
The price is ฿4,365
฿4,801 total
30 Nov - 1 Dec
THE KNOT TOKYO Shinjuku

4. Shinjuku Washington Hotel Main

Shinjuku Washington Hotel Main
4.0 star property
Shinjuku
8.2 out of 10, Very good, (4,376 reviews)
"Room was clean, the staff was gentle, and food great"
United States
Yasmy
The price is ฿3,528
฿4,269 total
1 Dec - 2 Dec
Shinjuku Washington Hotel Main

5. Shinjuku Granbell Hotel

Shinjuku Granbell Hotel
4.0 star property
Shinjuku
8.8 out of 10, Excellent, (2,518 reviews)
"We had a great time here!! Really spacious room and delicious breakfast!!"
Australia
Maddy
The price is ฿3,419
฿3,761 total
30 Nov - 1 Dec
Shinjuku Granbell Hotel

6. Hotel Metropolitan Edmont Tokyo

Hotel Metropolitan Edmont Tokyo
4.0 star property
4.2 km from Shinjuku
9.6 out of 10, Exceptional, (4,201 reviews)
"It was a great hotel in a great location and the staff was incredible!"
United States
Evgenii
The price is ฿4,501
฿5,595 total
23 Nov - 24 Nov
Hotel Metropolitan Edmont Tokyo

7. Keio Plaza Hotel Tokyo

Keio Plaza Hotel Tokyo
4.5 star property
Shinjuku
9.2 out of 10, Wonderful, (3,331 reviews)
"Excellent hotel, 100% recommended!"
Spain
Angela
The price is ฿7,635
฿9,659 total
30 Nov - 1 Dec
Keio Plaza Hotel Tokyo

8. The Prince Park Tower Tokyo - Preferred Hotels & Resorts, LVX Collection

The Prince Park Tower Tokyo - Preferred Hotels & Resorts, LVX Collection
5.0 star property
Minato, 5.8 km from Shinjuku
9.2 out of 10, Wonderful, (3,037 reviews)
"Great hotel!"
Canada
Aneep
The price is ฿9,969
฿12,675 total
3 Dec - 4 Dec
The Prince Park Tower Tokyo - Preferred Hotels & Resorts, LVX Collection

9. HOTEL GROOVE SHINJUKU, A PARKROYAL Hotel

HOTEL GROOVE SHINJUKU, A PARKROYAL Hotel
4.0 star property
Shinjuku
9.6 out of 10, Exceptional, (2,060 reviews)
"Wonderful hotel in a great neighborhood."
United States
Kirsten
The price is ฿10,076
฿12,524 total
3 Dec - 4 Dec
HOTEL GROOVE SHINJUKU, A PARKROYAL Hotel

10. Shinjuku Prince Hotel

Shinjuku Prince Hotel
4.0 star property
Shinjuku
9.0 out of 10, Wonderful, (1,882 reviews)
"Great location, clean room and breakfast was good value for money"
Australia
Megan
The price is ฿6,665
฿8,284 total
4 Nov - 5 Nov
Shinjuku Prince Hotel

11. Shinjuku Washington Hotel Annex

Shinjuku Washington Hotel Annex
4.0 star property
Shinjuku
8.6 out of 10, Excellent, (1,101 reviews)
"Great location for attractions and the breakfast was very good a d convenient."
Canada
Dave
The price is ฿3,661
฿4,430 total
2 Dec - 3 Dec
Shinjuku Washington Hotel Annex

12. Mitsui Garden Hotel Jingugaien Tokyo Premier

Mitsui Garden Hotel Jingugaien Tokyo Premier
4.5 star property
Shinjuku
9.4 out of 10, Exceptional, (1,879 reviews)
"Great hotel, i really loved it"
United States
Adonis
The price is ฿6,101
฿6,712 total
30 Nov - 1 Dec
Mitsui Garden Hotel Jingugaien Tokyo Premier

13. Apa Hotel Higashi Shinjuku Kabukicho Tower

Apa Hotel Higashi Shinjuku Kabukicho Tower
3.0 star property
Shinjuku
9.0 out of 10, Wonderful, (2,518 reviews)
"Second time to stay here and its amazing"
Canada
Ralf
The price is ฿3,399
฿4,113 total
29 Nov - 30 Nov
Apa Hotel Higashi Shinjuku Kabukicho Tower

14. Hyatt Regency Tokyo

Hyatt Regency Tokyo
4.5 star property
Shinjuku
9.2 out of 10, Wonderful, (1,008 reviews)
"Amazing property, well located with a wonderful team"
United States
Asher
The price is ฿8,712
฿11,021 total
3 Dec - 4 Dec
Hyatt Regency Tokyo

15. Hotel Sunroute Plaza Shinjuku

Hotel Sunroute Plaza Shinjuku
3.5 star property
0.9 km from Shinjuku
9.0 out of 10, Wonderful, (2,327 reviews)
"Breakfast is awesome and hotel amenities too, very central location close to all train station."
Canada
Jo ann
The price is ฿6,516
฿7,167 total
30 Nov - 1 Dec
Hotel Sunroute Plaza Shinjuku

16. APA Hotel & Resort Ryogoku Ekimae Tower

APA Hotel & Resort Ryogoku Ekimae Tower
3.0 star property
8.2 km from Shinjuku
9.0 out of 10, Wonderful, (6,925 reviews)
"Great location and overall enjoyable."
United States
Insiya
The price is ฿2,192
฿2,652 total
30 Nov - 1 Dec
APA Hotel & Resort Ryogoku Ekimae Tower

17. Shinagawa Prince Hotel

Shinagawa Prince Hotel
4.0 star property
7.9 km from Shinjuku
8.4 out of 10, Very good, (5,207 reviews)
"Our stay was perfect. Wonderful hotel."
United States
Kela
The price is ฿4,647
฿5,777 total
8 Nov - 9 Nov
Shinagawa Prince Hotel

18. Onsen Ryokan Yuen Shinjuku

Onsen Ryokan Yuen Shinjuku
3.5 star property
Shinjuku
9.2 out of 10, Wonderful, (1,008 reviews)
"Excellent stay"
United States
Kedrick
The price is ฿7,618
฿8,444 total
29 Nov - 30 Nov
Onsen Ryokan Yuen Shinjuku

19. SOTETSU GRAND FRESA TAKADANOBABA

SOTETSU GRAND FRESA TAKADANOBABA
3.5 star property
Shinjuku
9.4 out of 10, Exceptional, (1,268 reviews)
"very good location and delicious breakfast!"
United States
You Sun
The price is ฿3,081
฿3,389 total
23 Nov - 24 Nov
SOTETSU GRAND FRESA TAKADANOBABA

20. Tokyo Dome Hotel

Tokyo Dome Hotel
4.0 star property
4.6 km from Shinjuku
9.2 out of 10, Wonderful, (2,431 reviews)
"I recommend the hotel very well located, close to many activities"
United States
Ramon
The price is ฿5,344
฿6,466 total
3 Dec - 4 Dec
Tokyo Dome Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Shinjuku Hotel Reviews

Frequently asked questions

What's there to see and do in Shinjuku?
The bars, shopping and sightseeing are just some of the things to enjoy while you're in the area. Top activities and sights around Shinjuku include Tokyo Dome, Tokyo Tower and Tokyo Skytree. You might also want to see interesting spots such as Tokyo Disneyland®, Tokyo DisneySea® and Shibuya Crossing during your trip.
What's the best way to get to my boutique hotel in Shinjuku?
You have a few options for travelling to and around Shinjuku. The closest major airport is Tokyo (HND-Haneda), which is located 11 mi (17.7 km) away. You can walk to nearby metro stations including Shinjuku-sanchome Station, Shinjuku-nishiguchi Station and Higashi-shinjuku Station.