A busy urban street at night with illuminated billboards and a prominent Epson sign.

Search Boutique Hotels in Shinjuku

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Shinjuku Boutique Hotels

Our top choices for Shinjuku boutique hotels

A building with a large, lifelike dinosaur sculpture on the facade.

1. Hotel Gracery Shinjuku

Hotel Gracery Shinjuku
4.0 star property
Shinjuku
9.0 out of 10, Wonderful, (5,658 reviews)
"Amazing place to stay great location"
United States
Julie
The price is ฿4,892
฿5,920 total
7 Dec - 8 Dec
Hotel Gracery Shinjuku
A spacious lobby with modern seating, a ceiling with exposed pipes, and a large window with a view of greenery.

2. Tokyo Bay Shiomi Prince Hotel

Tokyo Bay Shiomi Prince Hotel
4.0 star property
10.9 km from Shinjuku
9.6 out of 10, Exceptional, (6,320 reviews)
"Great staff and location."
United States
Mei Sheng
The price is ฿5,408
฿6,723 total
30 Nov - 1 Dec
Tokyo Bay Shiomi Prince Hotel
A hotel entrance with a brick facade, outdoor seating area, and potted plants.

3. THE KNOT TOKYO Shinjuku

THE KNOT TOKYO Shinjuku
3.5 star property
Shinjuku
9.0 out of 10, Wonderful, (2,445 reviews)
"It was a great stay!"
United States
Robert
The price is ฿3,418
฿3,760 total
6 Dec - 7 Dec
THE KNOT TOKYO Shinjuku
Street view

4. Shinjuku Washington Hotel Main

Shinjuku Washington Hotel Main
4.0 star property
Shinjuku
8.2 out of 10, Very good, (4,379 reviews)
"Great hotel, perfect location."
United Kingdom
Keith
The price is ฿3,022
฿3,656 total
7 Dec - 8 Dec
Shinjuku Washington Hotel Main
A modern living room with a large window, a sofa, a coffee table, and a TV.

5. Shinjuku Granbell Hotel

Shinjuku Granbell Hotel
4.0 star property
Shinjuku
8.8 out of 10, Excellent, (2,546 reviews)
"We had a great time here!! Really spacious room and delicious breakfast!!"
Australia
Maddy
The price is ฿2,818
฿3,099 total
30 Nov - 1 Dec
Shinjuku Granbell Hotel
A traditional Japanese interior with tatami flooring, sliding doors, and a stone water feature.

6. Hotel Metropolitan Edmont Tokyo

Hotel Metropolitan Edmont Tokyo
4.0 star property
4.2 km from Shinjuku
9.6 out of 10, Exceptional, (4,246 reviews)
"It was a great hotel in a great location and the staff was incredible!"
United States
Evgenii
The price is ฿3,809
฿4,735 total
7 Dec - 8 Dec
Hotel Metropolitan Edmont Tokyo
A modern living room with a sofa, two glasses of champagne, and a view of a cityscape at night.

7. Keio Plaza Hotel Tokyo

Keio Plaza Hotel Tokyo
4.5 star property
Shinjuku
9.2 out of 10, Wonderful, (3,343 reviews)
"Excellent hotel, 100% recommended!"
Spain
Angela
The price is ฿8,380
฿10,601 total
30 Nov - 1 Dec
Keio Plaza Hotel Tokyo
A high-rise room with a panoramic view of a city skyline and a prominent tower.

8. The Prince Park Tower Tokyo - Preferred Hotels & Resorts, LVX Collection

The Prince Park Tower Tokyo - Preferred Hotels & Resorts, LVX Collection
5.0 star property
Minato, 5.8 km from Shinjuku
9.2 out of 10, Wonderful, (3,067 reviews)
"Rooms very clean staff super friendly and delicious breakfast"
United States
Saul
The price is ฿8,719
฿11,093 total
6 Dec - 7 Dec
The Prince Park Tower Tokyo - Preferred Hotels & Resorts, LVX Collection
A breakfast table with various foods, drinks, and utensils.

9. HOTEL GROOVE SHINJUKU, A PARKROYAL Hotel

HOTEL GROOVE SHINJUKU, A PARKROYAL Hotel
4.0 star property
Shinjuku
9.6 out of 10, Exceptional, (2,081 reviews)
"Clean room, friendly staff great service great location. The accommodations were great at this hotel."
United States
Francis
The price is ฿11,115
฿12,324 total
6 Dec - 7 Dec
HOTEL GROOVE SHINJUKU, A PARKROYAL Hotel
A modern interior with wooden paneling, a central seating area, and multiple tables and chairs.

10. Shinjuku Prince Hotel

Shinjuku Prince Hotel
4.0 star property
Shinjuku
9.0 out of 10, Wonderful, (1,899 reviews)
"great location"
Australia
Noah
The price is ฿5,170
฿6,426 total
6 Dec - 7 Dec
Shinjuku Prince Hotel
A dining table with breakfast items and a city view.

11. Shinjuku Washington Hotel Annex

Shinjuku Washington Hotel Annex
4.0 star property
Shinjuku
8.6 out of 10, Excellent, (1,118 reviews)
"Great location for attractions and the breakfast was very good a d convenient."
Canada
Dave
The price is ฿3,252
฿3,935 total
9 Dec - 10 Dec
Shinjuku Washington Hotel Annex
A cafe interior with wooden beams, a large central seating area, and a variety of baked goods displayed on shelves.

12. Mitsui Garden Hotel Jingugaien Tokyo Premier

Mitsui Garden Hotel Jingugaien Tokyo Premier
4.5 star property
Shinjuku
9.4 out of 10, Exceptional, (1,888 reviews)
"Great hotel, i really loved it"
United States
Adonis
The price is ฿5,955
฿6,551 total
30 Nov - 1 Dec
Mitsui Garden Hotel Jingugaien Tokyo Premier
A modern indoor swimming pool with a wooden ceiling and tiled walls.

13. Apa Hotel Higashi Shinjuku Kabukicho Tower

Apa Hotel Higashi Shinjuku Kabukicho Tower
3.0 star property
Shinjuku
9.0 out of 10, Wonderful, (2,530 reviews)
"Second time to stay here and its amazing"
Canada
Ralf
The price is ฿2,956
฿3,576 total
7 Dec - 8 Dec
Apa Hotel Higashi Shinjuku Kabukicho Tower
A spacious lobby with high ceilings, ornate chandeliers, and a central bar area.

14. Hyatt Regency Tokyo

Hyatt Regency Tokyo
4.5 star property
Shinjuku
9.2 out of 10, Wonderful, (1,001 reviews)
"Incredibly cozy stay, fantastic views, clean room, friendly staff and just beautiful property. Would def stay here again!!"
United States
Matthew
The price is ฿7,795
฿9,860 total
6 Dec - 7 Dec
Hyatt Regency Tokyo
A spacious lobby with a reception desk, comfortable seating area, and large windows offering views of the city.

15. Hotel Sunroute Plaza Shinjuku

Hotel Sunroute Plaza Shinjuku
3.5 star property
0.9 km from Shinjuku
9.2 out of 10, Wonderful, (2,334 reviews)
"Breakfast is awesome and hotel amenities too, very central location close to all train station."
Canada
Jo ann
The price is ฿5,469
฿6,606 total
6 Dec - 7 Dec
Hotel Sunroute Plaza Shinjuku
A modern indoor swimming pool with a city view, surrounded by lounge chairs and a checkered floor pattern.

16. APA Hotel & Resort Ryogoku Ekimae Tower

APA Hotel & Resort Ryogoku Ekimae Tower
3.0 star property
8.2 km from Shinjuku
9.0 out of 10, Wonderful, (6,929 reviews)
"Great location, beautiful and comfortable hotel!"
United States
Yamile G
The price is ฿2,107
฿2,549 total
30 Nov - 1 Dec
APA Hotel & Resort Ryogoku Ekimae Tower
A modern interior with large windows, a central table, and seating areas.

17. Shinagawa Prince Hotel

Shinagawa Prince Hotel
4.0 star property
7.9 km from Shinjuku
8.4 out of 10, Very good, (5,225 reviews)
"Great stay"
United States
Kian
The price is ฿3,113
฿3,869 total
23 Nov - 24 Nov
Shinagawa Prince Hotel
A modern interior with large windows, a reflective floor, and a view of a cityscape through a misty window.

18. Onsen Ryokan Yuen Shinjuku

Onsen Ryokan Yuen Shinjuku
3.5 star property
Shinjuku
9.2 out of 10, Wonderful, (1,001 reviews)
"Excellent stay"
United States
Kedrick
The price is ฿6,494
฿7,206 total
9 Dec - 10 Dec
Onsen Ryokan Yuen Shinjuku
A spacious lobby with a central seating area, two armchairs, a sofa, and a coffee table. There are two side tables with lamps, a potted plant, and a sign that reads "GRAND FRÈS."

19. SOTETSU GRAND FRESA TAKADANOBABA

SOTETSU GRAND FRESA TAKADANOBABA
3.5 star property
Shinjuku
9.4 out of 10, Exceptional, (1,290 reviews)
"very good location and delicious breakfast!"
United States
You Sun
The price is ฿2,983
฿3,282 total
23 Nov - 24 Nov
SOTETSU GRAND FRESA TAKADANOBABA
A dining table with plates of food and wine glasses, set against a cityscape view from a high-rise building.

20. Tokyo Dome Hotel

Tokyo Dome Hotel
4.0 star property
4.6 km from Shinjuku
9.2 out of 10, Wonderful, (2,453 reviews)
"Nice location & big room space!"
United States
KUN-YI
The price is ฿5,532
฿6,694 total
30 Nov - 1 Dec
Tokyo Dome Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Shinjuku Hotel Reviews

Shinjuku Prince Hotel

Shinjuku Prince Hotel

10/10 Excellent
"best place i have stayed at"
Anurag 5-night trip
Posted 14 hours ago
Shinjuku Prince Hotel

Frequently asked questions

What's there to see and do in Shinjuku?
The bars, shopping and sightseeing are just some of the things to enjoy while you're in the area. Top activities and sights around Shinjuku include Tokyo Dome, Tokyo Tower and Tokyo Skytree. You might also want to see interesting spots such as Tokyo Disneyland®, Tokyo DisneySea® and Shibuya Crossing during your trip.
What's the best way to get to my boutique hotel in Shinjuku?
You have a few options for travelling to and around Shinjuku. The closest major airport is Tokyo (HND-Haneda), which is located 11 mi (17.7 km) away. You can walk to nearby metro stations including Shinjuku-sanchome Station, Shinjuku-nishiguchi Station and Higashi-shinjuku Station.