A busy urban street at night with illuminated billboards and a prominent Epson sign.

Search Boutique Hotels in Shinjuku

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Shinjuku Boutique Hotels

Next weekend
30 Oct - 1 Nov
In two weeks
6 Nov - 8 Nov

Our top choices for Shinjuku boutique hotels

A spacious indoor pool area with lounge chairs and a high ceiling with a skylight.

1. Hotel Chinzanso Tokyo

Hotel Chinzanso Tokyo
5.0 star property
Bunkyo
9.8 out of 10, Exceptional, (1,186 reviews)
"Great place, attentive staff"
United States
Sergio
The price is ฿9,029
฿11,486 total
15 Nov - 16 Nov
Hotel Chinzanso Tokyo
A hotel room with a large bed, a sofa, a small table, and a view of the cityscape.

2. The Capitol Hotel Tokyu

The Capitol Hotel Tokyu
5.0 star property
Chiyoda
9.8 out of 10, Exceptional, (1,002 reviews)
"Excellent staff, extremely kind and helpful. Large and quiet room; had a great view and it was always kept immaculate as far as hotels can possibly be. Direct access to train station and located in nice secure area right by the Prime Minister’s offices."
United States
Sharon
The price is ฿21,509
฿27,209 total
2 Nov - 3 Nov
The Capitol Hotel Tokyu
A modern interior with large windows offering a city view, including a prominent tower.

3. The Gate Hotel Kaminarimon by Hulic

The Gate Hotel Kaminarimon by Hulic
4.0 star property
Taito
9.4 out of 10, Exceptional, (1,003 reviews)
"Great location, attentive staff, comfortable rooms."
United Kingdom
Nathan
The price is ฿5,313
฿6,428 total
26 Oct - 27 Oct
The Gate Hotel Kaminarimon by Hulic
A modern spa with a large heated pool, a separate hot tub, and a sauna area.

4. The Tokyo Station Hotel

The Tokyo Station Hotel
4.5 star property
Chiyoda
9.8 out of 10, Exceptional, (1,002 reviews)
"Great location, great staff, fitness, breakfast I highly recommend it"
United States
Viacheslav
The price is ฿21,524
฿27,227 total
29 Oct - 30 Oct
The Tokyo Station Hotel
An outdoor rooftop lounge with a sofa, coffee table, and planters, overlooking a city skyline at night.

5. Palace Hotel Tokyo

Palace Hotel Tokyo
5.0 star property
Chiyoda
9.8 out of 10, Exceptional, (1,000 reviews)
"One of the must stay hotels in Tokyo"
United States
Kuangyi
The price is ฿32,716
฿41,385 total
1 Nov - 2 Nov
Palace Hotel Tokyo
The exterior of Solaria Hotel with a modern facade, large glass entrance, and potted plants in front.

6. Solaria Nishitetsu Hotel Ginza

Solaria Nishitetsu Hotel Ginza
3.5 star property
Ginza
9.0 out of 10, Wonderful, (1,001 reviews)
"Clean, comfortable room, great location in Ginza"
United States
Soren
The price is ฿9,413
฿10,355 total
10 Nov - 11 Nov
Solaria Nishitetsu Hotel Ginza
A modern hotel room with a large window offering a city view, a sofa, a coffee table, and a dining area.

7. The Peninsula Tokyo

The Peninsula Tokyo
5.0 star property
Chiyoda
9.6 out of 10, Exceptional, (1,001 reviews)
"The very best accommodation and our absolutely favorite stay of our trip. Thank you for your hospitality"
United States
Consuelo
The price is ฿27,550
฿34,937 total
24 Nov - 25 Nov
The Peninsula Tokyo
A restaurant with tables set for dining, large windows offering a city skyline view, and modern interior design.

8. Shangri-La Tokyo

Shangri-La Tokyo
5.0 star property
Chiyoda
9.6 out of 10, Exceptional, (656 reviews)
"Great place, one of the best."
United States
arman
The price is ฿26,259
฿33,303 total
1 Nov - 2 Nov
Shangri-La Tokyo
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Shinjuku Hotel Reviews

Shinjuku Granbell Hotel

Shinjuku Granbell Hotel

10/10 Excellent
"Amazing service and room was perfect enough for my sister and i to stay in for a week!"
Daisy 7-night trip
Posted 4 hours ago
Shinjuku Granbell Hotel
Hotel Rose Garden Shinjuku

Hotel Rose Garden Shinjuku

10/10 Excellent
"The location was convenient and the staff were all so nice and so helpful!"
Elizabeth 3-night trip
Posted 2 days ago
Hotel Rose Garden Shinjuku

Frequently asked questions

What's there to see and do in Shinjuku?
The bars, shopping and sightseeing are just some of the things to enjoy while you're in the area. Top activities and sights around Shinjuku include Tokyo Dome, Tokyo Tower and Tokyo Skytree. You might also want to see interesting spots such as Tokyo Disneyland®, Tokyo DisneySea® and Shibuya Crossing during your trip.
What's the best way to get to my boutique hotel in Shinjuku?
You have a few options for travelling to and around Shinjuku. The closest major airport is Tokyo (HND-Haneda), which is located 11 mi (17.7 km) away. You can walk to nearby metro stations including Shinjuku-sanchome Station, Shinjuku-nishiguchi Station and Higashi-shinjuku Station.