A busy urban street at night with illuminated billboards and a prominent Epson sign.

Search Boutique Hotels in Shinjuku

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Shinjuku Boutique Hotels

This weekend
2 Oct - 4 Oct
Next weekend
9 Oct - 11 Oct

Our top choices for Shinjuku boutique hotels

A spacious indoor pool area with lounge chairs and a high ceiling with a skylight.

1. Hotel Chinzanso Tokyo

Hotel Chinzanso Tokyo
5.0 star property
Bunkyo
9.8 out of 10, Exceptional, (1,159 reviews)
"Great place, attentive staff"
United States
Sergio
The price is ฿8,418
฿10,713 total
30 Sept - 1 Oct
Hotel Chinzanso Tokyo
A hotel room with a large bed, a sofa, a small table, and a view of the cityscape.

2. The Capitol Hotel Tokyu

The Capitol Hotel Tokyu
5.0 star property
Chiyoda
9.8 out of 10, Exceptional, (1,006 reviews)
"Location os great"
United States
Yongsoo
The price is ฿18,084
฿22,876 total
30 Sept - 1 Oct
The Capitol Hotel Tokyu
A modern spa with a large heated pool, a separate hot tub, and a sauna area.

3. The Tokyo Station Hotel

The Tokyo Station Hotel
4.5 star property
Chiyoda
9.8 out of 10, Exceptional, (1,003 reviews)
"Great location and very nice staff."
United States
Marie
The price is ฿21,228
฿26,853 total
8 Oct - 9 Oct
The Tokyo Station Hotel
A modern interior with large windows offering a city view, including a prominent tower.

4. The Gate Hotel Kaminarimon by Hulic

The Gate Hotel Kaminarimon by Hulic
4.0 star property
Taito
9.4 out of 10, Exceptional, (1,014 reviews)
"Location was phenomenal. Staff very helpful Rooms were spacious"
Australia
Beau
The price is ฿5,011
฿6,063 total
30 Sept - 1 Oct
The Gate Hotel Kaminarimon by Hulic
An outdoor rooftop lounge with a sofa, coffee table, and planters, overlooking a city skyline at night.

5. Palace Hotel Tokyo

Palace Hotel Tokyo
5.0 star property
Chiyoda
9.8 out of 10, Exceptional, (1,001 reviews)
"Great hotel, great location, super helpful staff, and wonderful places to eat."
United Kingdom
Jaclyn
The price is ฿35,663
฿45,113 total
7 Oct - 8 Oct
Palace Hotel Tokyo
A modern hotel room with a large window offering a city view, a sofa, a coffee table, and a dining area.

6. The Peninsula Tokyo

The Peninsula Tokyo
5.0 star property
Chiyoda
9.6 out of 10, Exceptional, (1,002 reviews)
"The very best accommodation and our absolutely favorite stay of our trip. Thank you for your hospitality"
United States
Consuelo
The price is ฿28,819
฿36,541 total
6 Oct - 7 Oct
The Peninsula Tokyo
A restaurant with tables set for dining, large windows offering a city skyline view, and modern interior design.

7. Shangri-La Tokyo

Shangri-La Tokyo
5.0 star property
Chiyoda
9.6 out of 10, Exceptional, (649 reviews)
"Great place, one of the best."
United States
arman
The price is ฿30,313
฿38,432 total
9 Oct - 10 Oct
Shangri-La Tokyo
The exterior of Solaria Hotel with a modern facade, large glass entrance, and potted plants in front.

8. Solaria Nishitetsu Hotel Ginza

Solaria Nishitetsu Hotel Ginza
3.5 star property
Ginza
9.0 out of 10, Wonderful, (1,009 reviews)
"Nice quite clean rooms and fresh breakfast, good location clost to main roads and train stations"
Australia
Daryl
The price is ฿9,364
฿10,472 total
12 Oct - 13 Oct
Solaria Nishitetsu Hotel Ginza
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Shinjuku Hotel Reviews

Shinjuku Granbell Hotel

Shinjuku Granbell Hotel

10/10 Excellent
"Staff was helpful and are all multilingual, rooms were cleaned regularly, café was a good spot to chill."
Rico 8-night trip
Posted 3 hours ago
Shinjuku Granbell Hotel
Shinjuku Prince Hotel

Shinjuku Prince Hotel

10/10 Excellent
"1st time staying in Shinjuku. I wanted to be close to the clubs and nightlife action. I had a beautiful view from my room facing the Godzilla hotel. I could also see the Tokyo skytree from a distance. Great place, I would happily stay here again."
Norris 5-night trip
Posted 7 hours ago
Shinjuku Prince Hotel

Frequently asked questions

What's there to see and do in Shinjuku?
The bars, shopping and sightseeing are just some of the things to enjoy while you're in the area. Top activities and sights around Shinjuku include Tokyo Dome, Tokyo Tower and Tokyo Skytree. You might also want to see interesting spots such as Tokyo Disneyland®, Tokyo DisneySea® and Shibuya Crossing during your trip.
What's the best way to get to my boutique hotel in Shinjuku?
You have a few options for travelling to and around Shinjuku. The closest major airport is Tokyo (HND-Haneda), which is located 11 mi (17.7 km) away. You can walk to nearby metro stations including Shinjuku-sanchome Station, Shinjuku-nishiguchi Station and Higashi-shinjuku Station.