Search Hotels Near Shelter Island, San Diego

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Check prices for these dates

Tonight
25 Jan - 26 Jan
Tomorrow
26 Jan - 27 Jan
Next weekend
30 Jan - 1 Feb
In two weeks
6 Feb - 8 Feb

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Our top choices for Shelter Island hotels

Exterior

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,328 reviews)
"Beautiful location, great staff, always a pleasure to stay here"
United States
simona
The price is ฿3,887
฿4,468 total
includes taxes & fees
26 Jan - 27 Jan
Bay Club Hotel & Marina
Property grounds

Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (2,747 reviews)
"Great stay, highly recommend."
United States
Ryan
The price is ฿5,251
฿6,657 total
includes taxes & fees
8 Feb - 9 Feb
Humphreys Half Moon Inn
Exterior

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
8.8 out of 10, Excellent, (1,572 reviews)
"Great place.very clean great for family would definitely stay there again."
United States
Joseph
The price is ฿4,424
฿5,085 total
includes taxes & fees
16 Feb - 17 Feb
Best Western Plus Island Palms Hotel & Marina
Exterior

Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1,397 reviews)
"Best breakfast in a hotel that iv had in ages, great location and clean rooms. Definitely worth staying here. "
United States
Naomi
The price is ฿5,597
฿6,434 total
includes taxes & fees
16 Feb - 17 Feb
Homewood Suites by Hilton San Diego Airport/Liberty Station
Courtyard view

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,342 reviews)
"Our room was clean, well stocked staff was great & very comfortable bed."
United States
Benny
The price is ฿5,503
฿6,325 total
includes taxes & fees
30 Jan - 31 Jan
Courtyard by Marriott San Diego Airport/Liberty Station
Lobby

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,718 reviews)
"Great place to stay for access to the airport, staff was super!"
Canada
Alison
The price is ฿5,255
฿6,041 total
includes taxes & fees
7 Feb - 8 Feb
Hampton Inn & Suites San Diego Airport Liberty Station
Front of property

The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,003 reviews)
"Lovely spot would stay again "
United States
danixa
The price is ฿4,859
฿5,488 total
includes taxes & fees
17 Feb - 18 Feb
The Pearl Hotel
Gift shop

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,020 reviews)
"Super clean rooms and a great location "
United States
Mark
Sea Harbor Hotel
Standard Room, 2 Queen Beds, Non Smoking, Microwave | Desk, blackout curtains, iron/ironing board, cots/infant beds

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.6 out of 10, Excellent, (1,695 reviews)
"Great rate for a great stay!"
Canada
James
The price is ฿3,076
฿3,529 total
includes taxes & fees
26 Jan - 27 Jan
Best Western Yacht Harbor Hotel
Lobby

TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1,003 reviews)
" The hotel is very clean, and the staff are friendly and helpful"
United States
Jun
The price is ฿5,461
฿6,277 total
includes taxes & fees
16 Feb - 17 Feb
TownePlace Suites by Marriott San Diego Airport/Liberty Station
Terrace/patio

Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,199 reviews)
"Friendly staff, clean rooms and beautiful views. Location was great for cruise port. "
United States
Claudia
The price is ฿5,579
฿6,413 total
includes taxes & fees
6 Feb - 7 Feb
Hilton San Diego Airport/Harbor Island
View from room

The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.6 out of 10, Excellent, (659 reviews)
"So cutesy, veryyy nice patio area, super nice staff. "
United States
Too
The price is ฿4,664
฿5,361 total
includes taxes & fees
16 Feb - 17 Feb
The Monsaraz San Diego, Tapestry Collection by Hilton
Water view

Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.2 km from Shelter Island
8.2 out of 10, Very good, (1,000 reviews)
"Nice staff"
United States
Erika
The price is ฿5,692
฿8,407 total
includes taxes & fees
1 Feb - 2 Feb
Kona Kai San Diego
Bar (on property)

DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.2 out of 10, Very good, (1,005 reviews)
"We had a great day. The staff was extremely friendly and very attentive."
United States
Abigail
The price is ฿4,560
฿5,242 total
includes taxes & fees
8 Feb - 9 Feb
DoubleTree by Hilton San Diego Bayside
Exterior

Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,268 reviews)
"Great room, clean property and courteous staff"
United States
Reginald D.
The price is ฿3,099
฿3,500 total
includes taxes & fees
28 Jan - 29 Jan
Comfort Inn San Diego Airport At The Harbor
Lobby

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.4 out of 10, Good, (1,003 reviews)
"Very nice clean and friendly staff"
United States
ELIZABETH
The price is ฿2,768
฿3,177 total
includes taxes & fees
28 Jan - 29 Jan
Ramada by Wyndham San Diego Airport
Standard Room | Blackout curtains, iron/ironing board, free WiFi, bed sheets

Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.4 out of 10, Good, (365 reviews)
"Great staff and very friendly "
United States
Nalani
Hotel Point Loma
Exterior detail

Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,000 reviews)
"Room and bathroom were very clean loved that had microwave refrigerator disappointed didn’t have coffee pot"
United States
Pedro
Hotel Aqua Mar
Suite, 1 Bedroom | In-room safe, individually decorated, individually furnished, desk

Sunrise Inn San Diego

Sunrise Inn San Diego
2.0 star property
1.2 km from Shelter Island
5.6 out of 10, (1,004 reviews)
"For the price and location this hotel is great. My go to when I’m down in San Diego and don’t want to break the bank "
United States
carmina
Sunrise Inn San Diego
Family House, Private Bathroom | Living area | Computer monitors

New Cozy Studio 2 Queen Beds, Kitchen Walk to Water

New Cozy Studio 2 Queen Beds, Kitchen Walk to Water
3.0 star property
1.3 km from Shelter Island
8.0 out of 10, Very good, (1 review)
"The studio was beautiful, clean, and cozy. The only thing that I will say is that the pictures advertised show both the main home and the studio, so it is misleading as to what amenities are available in your own space. Other than that I enjoyed my stay and the owner was very prompt to respond to the few questions that I had."
United States
Fatimah
The price is ฿3,790
฿9,555 total
includes taxes & fees
10 Feb - 11 Feb
New Cozy Studio 2 Queen Beds, Kitchen Walk to Water
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Shelter Island Hotel Reviews

The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton

10/10 Excellent
"The Staff was wonderful from the time we walked in at check-in to when we checked out. 3 night stay from Dec 28th - Dec 31st. From Angelica, Manny, Kevin and Mitch the bartender. Great Customer service and we love the area the Hotel is located. Thanks again from my Brother, my son and myself for a family fun getaway to end the year ❤️ "
MARIA 3-night trip
Posted 2 weeks ago
The Monsaraz San Diego, Tapestry Collection by Hilton
Kona Kai San Diego

Kona Kai San Diego

10/10 Excellent
"Room nicely appointed. Great view of boats. Service and food at conference was very good. I had a very enjoyable stay"
Barbara 2-night trip
Posted 3 months ago
Kona Kai San Diego

Hotels near other Shelter Island attractions

Sunset Cliffs Natural Park, San Diego, California

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.
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Favorite sunset
Photo by Bikini Traveler
Open Photo by Bikini Traveler

Breakers Beach

Why not spend a lazy afternoon at Breakers Beach during your trip to San Diego? Experience the acclaimed art galleries and fascinating museums in this walkable area.
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Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 47 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Kona Kai San Diego.
How many hotels will I be able to find near Shelter Island?
Expedia has 47 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.