Search Hotels Near Shelter Island, San Diego

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Our top choices for Shelter Island hotels

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,340 reviews)
"Beautiful location, great staff, always a pleasure to stay here"
United States
simona
The price is ฿3,943
฿4,532 total
includes taxes & fees
23 Feb - 24 Feb
Bay Club Hotel & Marina

Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (2,751 reviews)
"Beautiful place!"
United States
Peter
The price is ฿5,277
฿6,690 total
includes taxes & fees
8 Feb - 9 Feb
Humphreys Half Moon Inn

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
8.8 out of 10, Excellent, (1,575 reviews)
"Great place.very clean great for family would definitely stay there again."
United States
Joseph
The price is ฿4,446
฿5,111 total
includes taxes & fees
16 Feb - 17 Feb
Best Western Plus Island Palms Hotel & Marina

Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1,398 reviews)
"Best breakfast in a hotel that iv had in ages, great location and clean rooms. Definitely worth staying here. "
United States
Naomi
The price is ฿5,628
฿6,469 total
includes taxes & fees
16 Feb - 17 Feb
Homewood Suites by Hilton San Diego Airport/Liberty Station

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,022 reviews)
"Super clean rooms and a great location "
United States
Mark
Sea Harbor Hotel

The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,003 reviews)
"Lovely spot would stay again "
United States
danixa
The price is ฿4,883
฿5,516 total
includes taxes & fees
9 Feb - 10 Feb
The Pearl Hotel

Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.2 km from Shelter Island
8.2 out of 10, Very good, (1,002 reviews)
"Nice staff"
United States
Erika
The price is ฿5,720
฿8,449 total
includes taxes & fees
1 Feb - 2 Feb
Kona Kai San Diego

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.6 out of 10, Excellent, (1,699 reviews)
"Great rate for a great stay!"
Canada
James
The price is ฿3,091
฿3,547 total
includes taxes & fees
28 Jan - 29 Jan
Best Western Yacht Harbor Hotel

The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.6 out of 10, Excellent, (659 reviews)
"So cutesy, veryyy nice patio area, super nice staff. "
United States
Too
The price is ฿4,765
฿5,478 total
includes taxes & fees
16 Feb - 17 Feb
The Monsaraz San Diego, Tapestry Collection by Hilton

DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.2 out of 10, Very good, (1,007 reviews)
"Staff were great. Room in the front building was great. "
United States
Gretchen S
The price is ฿4,560
฿5,242 total
includes taxes & fees
8 Feb - 9 Feb
DoubleTree by Hilton San Diego Bayside

Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,271 reviews)
"Great room, clean property and courteous staff"
United States
Reginald D.
The price is ฿2,833
฿3,200 total
includes taxes & fees
22 Feb - 23 Feb
Comfort Inn San Diego Airport At The Harbor

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.4 out of 10, Good, (1,004 reviews)
"Very nice clean and friendly staff"
United States
ELIZABETH
The price is ฿2,754
฿3,160 total
includes taxes & fees
28 Jan - 29 Jan
Ramada by Wyndham San Diego Airport

Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.4 out of 10, Good, (367 reviews)
"Great staff and very friendly "
United States
Nalani
Hotel Point Loma

Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,001 reviews)
"Room and bathroom were very clean loved that had microwave refrigerator disappointed didn’t have coffee pot"
United States
Pedro
Hotel Aqua Mar

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,720 reviews)
"Great place to stay for access to the airport, staff was super!"
Canada
Alison
The price is ฿5,255
฿6,041 total
includes taxes & fees
7 Feb - 8 Feb
Hampton Inn & Suites San Diego Airport Liberty Station

Sunrise Inn San Diego

Sunrise Inn San Diego
2.0 star property
1.2 km from Shelter Island
5.6 out of 10, (1,004 reviews)
"For the price and location this hotel is great. My go to when I’m down in San Diego and don’t want to break the bank "
United States
carmina
Sunrise Inn San Diego

New Cozy Studio 2 Queen Beds, Kitchen Walk to Water

New Cozy Studio 2 Queen Beds, Kitchen Walk to Water
3.0 star property
1.3 km from Shelter Island
8.0 out of 10, Very good, (1 review)
"The studio was beautiful, clean, and cozy. The only thing that I will say is that the pictures advertised show both the main home and the studio, so it is misleading as to what amenities are available in your own space. Other than that I enjoyed my stay and the owner was very prompt to respond to the few questions that I had."
United States
Fatimah
The price is ฿3,790
฿9,555 total
includes taxes & fees
9 Feb - 10 Feb
New Cozy Studio 2 Queen Beds, Kitchen Walk to Water

The Inn at Sunset Cliffs

The Inn at Sunset Cliffs
2.5 star property
Ocean Beach, 3.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,002 reviews)
"Great location, staff was so friendly and courteous, and amazing views!"
United States
Katrina
The price is ฿6,732
฿7,591 total
includes taxes & fees
12 Feb - 13 Feb
The Inn at Sunset Cliffs

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (407 reviews)
"Clean rooms, decent staff, decent breakfast, good location"
United States
Minhaz
Samesun Ocean Beach - Hostel

California Dreams Hostel - Ocean Beach

California Dreams Hostel - Ocean Beach
2.0 star property
Point Loma Heights, 3.2 km from Shelter Island
8.8 out of 10, Excellent, (206 reviews)
"The staff here are terrific and the kitchen is awesome "
United States
Jason
California Dreams Hostel - Ocean Beach
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Shelter Island Hotel Reviews

Hotels near other Shelter Island attractions

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 47 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Kona Kai San Diego.
How many hotels will I be able to find near Shelter Island?
Expedia has 47 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.