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Our top choices for Shelter Island hotels

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,532 reviews)
"The rooms are spotless with very comfortable beds. The staff is very friendly and helpful. The location on Shelter Island is great."
United States
Mary
The price is ฿5,397
฿6,204 total
includes taxes & fees
28 Apr - 29 Apr
Bay Club Hotel & Marina

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,603 reviews)
"Great value,perfect location on shelter Island,rooms clean,beds dreamly comfortable."
United States
TOM
The price is ฿4,879
฿5,609 total
includes taxes & fees
27 Apr - 28 Apr
Best Western Plus Island Palms Hotel & Marina

Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (2,891 reviews)
"The resort was clean and fun! Great location! Free bikes rentals to tour Shelter Island were so fun! "
United States
Samantha
The price is ฿6,382
฿7,977 total
includes taxes & fees
10 May - 11 May
Humphreys Half Moon Inn

Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1,447 reviews)
"Another fabulous stay at this hotel, highly recommend. Breakfast was full of choices...loved the waffles!, area kept very clean and staff attentive. Pool was lovely and refreshing, perfect temperature and very clean. Ideal location to visit local areas of interest, to include U.S.S. Midway, Seaport Village, Old Town etc etc. Will be back, thank you :) "
United States
Randall Scott
The price is ฿6,284
฿7,224 total
includes taxes & fees
27 Apr - 28 Apr
Homewood Suites by Hilton San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,300 reviews)
"Adriana at the front desk is a gem and went out of her way to make us feel welcome. Patrick at check out was also fabulous and friendly. Were locals just there for a mini getaway and would definitely stay again. Rooom 331 had a great giew"
United States
Miranda
The price is ฿5,680
฿6,529 total
includes taxes & fees
26 Apr - 27 Apr
Courtyard by Marriott San Diego Airport/Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,713 reviews)
"Great location for the airport stay"
United States
Christopher
The price is ฿5,334
฿6,131 total
includes taxes & fees
26 Apr - 27 Apr
Hampton Inn & Suites San Diego Airport Liberty Station

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,006 reviews)
"Clean rooms and safe area. Beds were comfy. The rooms are small but functional. Had a great stay. "
United States
Erin
The price is ฿3,838
฿4,328 total
includes taxes & fees
4 May - 5 May
Sea Harbor Hotel

The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,000 reviews)
"Everything was perfect, A much recommended place for people going on a trip to SD. I can’t forget the super comfy bed and pillows, The wife loved them !!"
United States
david
The price is ฿4,671
฿5,275 total
includes taxes & fees
28 Apr - 29 Apr
The Pearl Hotel

Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,198 reviews)
"Harbor Island is very convenient to the airport. Staff was very nice; had a good meal in the restaurant there."
United States
Karen
The price is ฿4,970
฿5,713 total
includes taxes & fees
10 May - 11 May
Hilton San Diego Airport/Harbor Island

The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.6 out of 10, Excellent, (716 reviews)
"Fantastic hotel with very friendly staff. It’s in a perfect spot to stay at. Would recommend to anyone!!"
United States
Mohammad
The price is ฿5,362
฿6,163 total
includes taxes & fees
28 Apr - 29 Apr
The Monsaraz San Diego, Tapestry Collection by Hilton

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.6 out of 10, Excellent, (1,806 reviews)
"Staff are great. Awesome location. Good breakfast, heated pool. Would stay again!"
United States
Kent
The price is ฿4,522
฿5,189 total
includes taxes & fees
20 Apr - 21 Apr
Best Western Yacht Harbor Hotel

Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.2 km from Shelter Island
8.2 out of 10, Very good, (1,000 reviews)
"I loved staying at this property on shelter Island in San Diego. The Bay trail that’s nearby overlooking the bay, and the city itself was just beautiful. The hotel property was well appointed love the amenities like the pool and spa. The food was very good "
United States
Linda
The price is ฿6,703
฿9,629 total
includes taxes & fees
10 May - 11 May
Kona Kai San Diego

DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.4 out of 10, Very good, (1,002 reviews)
"Easy access to Shelter Island, this hotel has a good location. Room was comfortable and well appointed, and front desk was friendly and helpful."
United States
Ashley
The price is ฿4,444
฿5,108 total
includes taxes & fees
26 Apr - 27 Apr
DoubleTree by Hilton San Diego Bayside

Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,420 reviews)
"Great location close to Shelter Island, Point Loma, Airport, not far to downtown & Old Town. Good value for budget hotel, decent breakfast. Pool looks nice but not heated so not very usable in the offseason."
United States
Halsey
The price is ฿3,484
฿3,935 total
includes taxes & fees
10 May - 11 May
Comfort Inn San Diego Airport At The Harbor

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.4 out of 10, Good, (1,002 reviews)
"Staff was great. Nice area. Hotel was a dive."
United States
Anna
The price is ฿3,421
฿3,926 total
includes taxes & fees
27 Apr - 28 Apr
Ramada by Wyndham San Diego Airport

Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.4 out of 10, Good, (402 reviews)
"Amazing front desk staff! Very accommodating and excellent customer service! Great place to stay! Love the much needed appliances especially for longer term stays. Definitely recommend! 😊"
United States
lauren
The price is ฿2,458
฿2,772 total
includes taxes & fees
12 Apr - 13 Apr
Hotel Point Loma

Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,003 reviews)
"small little hotel motel very well located very clean very friendly. It's a good place to sleep. I met all my needs."
United States
Elizabeth
The price is ฿4,332
฿4,884 total
includes taxes & fees
17 Apr - 18 Apr
Hotel Aqua Mar

Sunrise Inn San Diego

Sunrise Inn San Diego
2.0 star property
1.2 km from Shelter Island
5.6 out of 10, (1,001 reviews)
"Likes: Room was very clean; Bed comfortable; HVAC very good; large flat screen tv; microwave Dislikes: unable to figure out how to access local tv channels - only had HDMI GRIT channel; no tissues in room; had trouble finding entry to office from street; office was very minimal - behind glass cubical; no help available for baggage; parking was in facility and adequate, but very limited number of spaces. Overall:Given that I was alone and only stayed overnight following an event on Shelter...
United States
Lou
The price is ฿3,198
฿3,606 total
includes taxes & fees
27 Apr - 28 Apr
Sunrise Inn San Diego

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (467 reviews)
"Fantastic hostel! Very clean and well equipped with everything you need. And so close to the beach! Great place to stay in OB! "
United States
Erik
The price is ฿1,954
฿2,207 total
includes taxes & fees
20 Apr - 21 Apr
Samesun Ocean Beach - Hostel

The Inn at Sunset Cliffs

The Inn at Sunset Cliffs
2.5 star property
Ocean Beach, 3.6 km from Shelter Island
9.2 out of 10, Wonderful, (999 reviews)
"right on the ocean, great view"
United States
michelle
The price is ฿6,915
฿7,796 total
includes taxes & fees
21 Apr - 22 Apr
The Inn at Sunset Cliffs
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Shelter Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Bay Club Hotel & Marina
3.5 star property
9.2
Wonderful
3,532 reviews
View
Exterior
Best Western Plus Island Palms Hotel & Marina
3.0 star property
9.0
Wonderful
1,603 reviews
View
Property grounds
Humphreys Half Moon Inn
3.5 star property
9.2
Wonderful
2,891 reviews
View
Exterior
Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
9.4
Exceptional
1,447 reviews
View
Courtyard view
Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
9.2
Wonderful
1,300 reviews
View

Top Shelter Island Hotel Reviews

Hotels near other Shelter Island attractions

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 38 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Kona Kai San Diego.
How many hotels will I be able to find near Shelter Island?
Expedia has 38 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Point Loma Lighthouse, Hotel del Coronado and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.