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Our top choices for Shelter Island hotels

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,508 reviews)
"Great place to stay. "
United States
David D
The price is ฿4,802
฿5,520 total
includes taxes & fees
25 Mar - 26 Mar
Bay Club Hotel & Marina

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,596 reviews)
"It as got good restaurant too"
United States
akash kamble
The price is ฿5,284
฿6,074 total
includes taxes & fees
5 Apr - 6 Apr
Best Western Plus Island Palms Hotel & Marina

Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (2,835 reviews)
"Great stay"
United States
Chris
The price is ฿5,888
฿7,425 total
includes taxes & fees
5 Apr - 6 Apr
Humphreys Half Moon Inn

Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1,436 reviews)
"Amazing property and staff!!"
United States
Victor
The price is ฿6,627
฿7,618 total
includes taxes & fees
7 Apr - 8 Apr
Homewood Suites by Hilton San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,323 reviews)
"Will definitely be returning to stay here again!"
United States
JUDITH
The price is ฿6,118
฿7,033 total
includes taxes & fees
1 Apr - 2 Apr
Courtyard by Marriott San Diego Airport/Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,735 reviews)
"Great location for the airport stay"
United States
Christopher
The price is ฿5,760
฿6,621 total
includes taxes & fees
3 Apr - 4 Apr
Hampton Inn & Suites San Diego Airport Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1,004 reviews)
"Excellent place to stay."
United States
Rosario
The price is ฿5,284
฿6,074 total
includes taxes & fees
7 Apr - 8 Apr
TownePlace Suites by Marriott San Diego Airport/Liberty Station

The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,001 reviews)
"The hotel was clean and neat. "
United States
Paula
The price is ฿4,704
฿5,313 total
includes taxes & fees
15 Apr - 16 Apr
The Pearl Hotel

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,008 reviews)
"Great location with Key West-like classic charm. "
United States
Matthew
Sea Harbor Hotel

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.6 out of 10, Excellent, (1,785 reviews)
"Great breakfast, comfortable room. "
United States
Rebecca
The price is ฿3,980
฿4,567 total
includes taxes & fees
5 Apr - 6 Apr
Best Western Yacht Harbor Hotel

Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,202 reviews)
"Nice area to stay"
United States
Angela
The price is ฿5,367
฿6,169 total
includes taxes & fees
5 Apr - 6 Apr
Hilton San Diego Airport/Harbor Island

The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.6 out of 10, Excellent, (698 reviews)
"Good place to stay"
United States
Wen Zhi
The price is ฿5,236
฿6,019 total
includes taxes & fees
6 Apr - 7 Apr
The Monsaraz San Diego, Tapestry Collection by Hilton

Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.2 km from Shelter Island
8.2 out of 10, Very good, (1,005 reviews)
"It was okay"
United States
Justin Craig
The price is ฿7,399
฿10,478 total
includes taxes & fees
19 Apr - 20 Apr
Kona Kai San Diego

DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.2 out of 10, Very good, (1,012 reviews)
"Nice was very close to airport and had a shuttle "
United States
Elijah
The price is ฿4,963
฿5,704 total
includes taxes & fees
3 Apr - 4 Apr
DoubleTree by Hilton San Diego Bayside

Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,382 reviews)
"It was a great stay!"
United States
Riley
The price is ฿3,704
฿4,183 total
includes taxes & fees
13 Apr - 14 Apr
Comfort Inn San Diego Airport At The Harbor

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.4 out of 10, Good, (1,010 reviews)
"Really nice old school small hotel; more like a motel. Very nice staff and great location. "
United States
William
The price is ฿3,454
฿3,964 total
includes taxes & fees
5 Apr - 6 Apr
Ramada by Wyndham San Diego Airport

Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.4 out of 10, Good, (395 reviews)
"Great staff- descent rooms- great area!"
United States
Mark
Hotel Point Loma

Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,001 reviews)
"Clean room--pretty basic but enough to enjoy a couple nights. "
United States
Joshua
Hotel Aqua Mar

Sunrise Inn San Diego

Sunrise Inn San Diego
2.0 star property
1.2 km from Shelter Island
5.6 out of 10, (1,000 reviews)
"For the price and location this hotel is great. My go to when I’m down in San Diego and don’t want to break the bank "
United States
carmina
Sunrise Inn San Diego

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (452 reviews)
"Great location! "
United States
Ty
Samesun Ocean Beach - Hostel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Shelter Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Terrace/patio
Bay Club Hotel & Marina
3.5 star property
9.2
Wonderful
3,508 reviews
View
Exterior
Best Western Plus Island Palms Hotel & Marina
3.0 star property
9.0
Wonderful
1,596 reviews
View
Property grounds
Humphreys Half Moon Inn
3.5 star property
9.2
Wonderful
2,835 reviews
View
Exterior
Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
9.4
Exceptional
1,436 reviews
View
Courtyard view
Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
9.2
Wonderful
1,323 reviews
View

Top Shelter Island Hotel Reviews

Hotels near other Shelter Island attractions

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 45 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Kona Kai San Diego.
How many hotels will I be able to find near Shelter Island?
Expedia has 45 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.