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Our top choices for Shelter Island hotels

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,696 reviews)
"Loved my stay there."
United States
Teresa
The price is ฿5,915
฿6,800 total
includes taxes & fees
7 Jul - 8 Jul
Bay Club Hotel & Marina

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,594 reviews)
"Clean room staff very helpful and friendly Enjoyed pool and bar was great"
United States
Beach To
The price is ฿5,362
฿6,163 total
includes taxes & fees
20 Jul - 21 Jul
Best Western Plus Island Palms Hotel & Marina

Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (3,011 reviews)
"Excellent stay!"
United States
Ashley
The price is ฿8,303
฿10,211 total
includes taxes & fees
20 Jul - 21 Jul
Humphreys Half Moon Inn

Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1,557 reviews)
"Great stay, everything was outstanding"
United States
Bill
The price is ฿7,648
฿8,791 total
includes taxes & fees
19 Jul - 20 Jul
Homewood Suites by Hilton San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,293 reviews)
"Was a lovely stay and it overlooks the water."
United States
Kara
The price is ฿6,203
฿7,130 total
includes taxes & fees
2 Aug - 3 Aug
Courtyard by Marriott San Diego Airport/Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,705 reviews)
"Good location, clean room and nice staff. A great place to stay."
United States
Patricia
The price is ฿5,715
฿6,569 total
includes taxes & fees
19 Jul - 20 Jul
Hampton Inn & Suites San Diego Airport Liberty Station

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,017 reviews)
"Great location next to a peir side brewery and seafood restaurants"
United States
Ryan
The price is ฿5,657
฿6,379 total
includes taxes & fees
19 Jul - 20 Jul
Sea Harbor Hotel

TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1,000 reviews)
"So convenient, great staff, excellent shuttle service, clean hotel I was very impressed."
United States
Terry
The price is ฿6,637
฿7,628 total
includes taxes & fees
2 Aug - 3 Aug
TownePlace Suites by Marriott San Diego Airport/Liberty Station

Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,191 reviews)
"Loved our stay it had beautiful views and easy accessibility"
United States
Crystal
The price is ฿5,715
฿6,569 total
includes taxes & fees
19 Jul - 20 Jul
Hilton San Diego Airport/Harbor Island

Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.2 km from Shelter Island
8.2 out of 10, Very good, (1,002 reviews)
"Pools were nice.. Staff was friendly and view were great!"
United States
David
The price is ฿10,304
฿13,845 total
includes taxes & fees
6 Jul - 7 Jul
Kona Kai San Diego

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.4 out of 10, Very good, (1,951 reviews)
"The friendly staff and delicious breakfast are wonderful."
Japan
Nakamori
The price is ฿5,369
฿6,161 total
includes taxes & fees
5 Jul - 6 Jul
Best Western Yacht Harbor Hotel

DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.4 out of 10, Very good, (1,032 reviews)
"Great stay!!! Recommend. So kind and our room was incredible!"
United States
Ana Maria
The price is ฿5,168
฿5,940 total
includes taxes & fees
8 Jul - 9 Jul
DoubleTree by Hilton San Diego Bayside

The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.4 out of 10, Very good, (768 reviews)
"Nice rooms, great location."
United States
Debbie
The price is ฿5,027
฿5,779 total
includes taxes & fees
6 Jul - 7 Jul
The Monsaraz San Diego, Tapestry Collection by Hilton

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
2.0 star property
1.2 km from Shelter Island
8.0 out of 10, Very good, (62 reviews)
"Near airport."
United States
Justin
The price is ฿3,691
฿4,162 total
includes taxes & fees
20 Jul - 21 Jul
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,557 reviews)
"harbor view n breakfast were good n friendly staff"
United States
Nercy
The price is ฿4,931
฿5,569 total
includes taxes & fees
5 Jul - 6 Jul
Comfort Inn San Diego Airport At The Harbor

Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.6 out of 10, Good, (441 reviews)
"Nice stay for 2 nights. Close to coffee shops and restaurants."
United States
ERNESTO
The price is ฿4,533
฿5,111 total
includes taxes & fees
2 Aug - 3 Aug
Hotel Point Loma

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.6 out of 10, Good, (1,001 reviews)
"Parking was handy Staff very kind, thoughtful and helpful"
Canada
carla
The price is ฿4,337
฿4,976 total
includes taxes & fees
2 Aug - 3 Aug
Ramada by Wyndham San Diego Airport

Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,000 reviews)
"Dave at the front desk was very accommodating and helpful with my check in needs"
United States
Michael
The price is ฿2,936
฿3,310 total
includes taxes & fees
6 Jul - 7 Jul
Hotel Aqua Mar

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (528 reviews)
"Busy and fun place to stay"
United States
Samantha
The price is ฿2,684
฿3,031 total
includes taxes & fees
13 Jul - 14 Jul
Samesun Ocean Beach - Hostel

City24 Hotel Little Italy Mission Hills

City24 Hotel Little Italy Mission Hills
4.5 star property
5.9 km from Shelter Island
9.8 out of 10, Exceptional, (168 reviews)
"Nice and very friendly staff was a great stay"
United States
Alexander
The price is ฿4,711
฿6,446 total
includes taxes & fees
5 Jul - 6 Jul
City24 Hotel Little Italy Mission Hills
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Shelter Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Bay Club Hotel & Marina
3.5 star property
9.2
Wonderful
3,696 reviews
View
Exterior
Best Western Plus Island Palms Hotel & Marina
3.0 star property
9.0
Wonderful
1,594 reviews
View
Property grounds
Humphreys Half Moon Inn
3.5 star property
9.2
Wonderful
3,011 reviews
View
Exterior
Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
9.4
Exceptional
1,557 reviews
View
Courtyard view
Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
9.2
Wonderful
1,293 reviews
View

Top Shelter Island Hotel Reviews

Hotels near other Shelter Island attractions

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 40 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Kona Kai San Diego.
How many hotels will I be able to find near Shelter Island?
Expedia has 40 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.