Search Hotels Near Shelter Island, San Diego

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Check prices for these dates

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7 Mar - 8 Mar
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8 Mar - 9 Mar
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13 Mar - 15 Mar
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20 Mar - 22 Mar

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Our top choices for Shelter Island hotels

Terrace/patio

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
La Playa, 0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,468 reviews)
"We had great time and enjoyed our stay "
United States
sadra
The price is ฿3,987
฿4,583 total
includes taxes & fees
9 Mar - 10 Mar
Bay Club Hotel & Marina
Property grounds

Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
La Playa, 1 km from Shelter Island
9.2 out of 10, Wonderful, (2,810 reviews)
"Great stay, highly recommend."
United States
Ryan
The price is ฿5,705
฿7,195 total
includes taxes & fees
5 Apr - 6 Apr
Humphreys Half Moon Inn
Exterior

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
La Playa, 0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,591 reviews)
"Great place.very clean great for family would definitely stay there again."
United States
Joseph
The price is ฿4,564
฿5,246 total
includes taxes & fees
5 Apr - 6 Apr
Best Western Plus Island Palms Hotel & Marina
Exterior

Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1,438 reviews)
"Spacious rooms, great breakfast, clean hotel, would stay here again."
United States
Pamela
The price is ฿6,220
฿7,150 total
includes taxes & fees
5 Apr - 6 Apr
Homewood Suites by Hilton San Diego Airport/Liberty Station
Courtyard view

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,322 reviews)
"Our room was clean, well stocked staff was great & very comfortable bed."
United States
Benny
The price is ฿5,645
฿6,489 total
includes taxes & fees
1 Apr - 2 Apr
Courtyard by Marriott San Diego Airport/Liberty Station
Lobby

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,738 reviews)
"Clean, quiet, helpful staff and simple airport transfers. "
United States
Jill
The price is ฿5,582
฿6,416 total
includes taxes & fees
3 Apr - 4 Apr
Hampton Inn & Suites San Diego Airport Liberty Station
Standard Room, 2 Queen Beds, Non Smoking, Microwave | Desk, blackout curtains, iron/ironing board, cots/infant beds

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.6 out of 10, Excellent, (1,766 reviews)
"Well stay again love the location"
United States
Lynette
The price is ฿3,219
฿3,694 total
includes taxes & fees
9 Mar - 10 Mar
Best Western Yacht Harbor Hotel
Gift shop

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,013 reviews)
"Super clean rooms and a great location "
United States
Mark
Sea Harbor Hotel
Front of property

The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,007 reviews)
"Lovely spot would stay again "
United States
danixa
The price is ฿4,633
฿5,232 total
includes taxes & fees
6 Apr - 7 Apr
The Pearl Hotel
Lobby

TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1,003 reviews)
" The hotel is very clean, and the staff are friendly and helpful"
United States
Jun
The price is ฿5,422
฿6,232 total
includes taxes & fees
5 Apr - 6 Apr
TownePlace Suites by Marriott San Diego Airport/Liberty Station
Terrace/patio

Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,201 reviews)
"Friendly staff, clean rooms and beautiful views. Location was great for cruise port. "
United States
Claudia
The price is ฿5,201
฿5,978 total
includes taxes & fees
5 Apr - 6 Apr
Hilton San Diego Airport/Harbor Island
View from room

The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.6 out of 10, Excellent, (685 reviews)
"Staff was very friendly and accommodating Rooms are clean and fresh Fun games in the courtyard "
United States
Lucas
The price is ฿5,201
฿5,978 total
includes taxes & fees
2 Apr - 3 Apr
The Monsaraz San Diego, Tapestry Collection by Hilton
Water view

Kona Kai San Diego

Kona Kai San Diego
4.0 star property
La Playa, 0.2 km from Shelter Island
8.2 out of 10, Very good, (1,003 reviews)
"Nice staff"
United States
Erika
The price is ฿7,624
฿10,676 total
includes taxes & fees
9 Mar - 10 Mar
Kona Kai San Diego
Bar (on property)

DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.2 out of 10, Very good, (1,010 reviews)
"Staff were great. Room in the front building was great. "
United States
Gretchen S
The price is ฿5,201
฿5,978 total
includes taxes & fees
22 Mar - 23 Mar
DoubleTree by Hilton San Diego Bayside
Exterior

Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,338 reviews)
"Great room, clean property and courteous staff"
United States
Reginald D.
The price is ฿3,202
฿3,616 total
includes taxes & fees
6 Apr - 7 Apr
Comfort Inn San Diego Airport At The Harbor
Room, 1 King Bed, Non Smoking (Harbor View) | Beach/ocean view

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.4 out of 10, Good, (1,009 reviews)
"Very nice clean and friendly staff"
United States
ELIZABETH
The price is ฿3,343
฿3,836 total
includes taxes & fees
11 Mar - 12 Mar
Ramada by Wyndham San Diego Airport
Standard Room | Blackout curtains, iron/ironing board, free WiFi, bed sheets

Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.4 out of 10, Good, (385 reviews)
"Great staff and very friendly "
United States
Nalani
Hotel Point Loma
Exterior detail

Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,002 reviews)
"Room and bathroom were very clean loved that had microwave refrigerator disappointed didn’t have coffee pot"
United States
Pedro
Hotel Aqua Mar
In-room safe, individually decorated, individually furnished, desk

Sunrise Inn San Diego

Sunrise Inn San Diego
2.0 star property
1.2 km from Shelter Island
5.6 out of 10, (1,003 reviews)
"For the price and location this hotel is great. My go to when I’m down in San Diego and don’t want to break the bank "
United States
carmina
Sunrise Inn San Diego
Lobby sitting area

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (440 reviews)
"Clean rooms, decent staff, decent breakfast, good location"
United States
Minhaz
Samesun Ocean Beach - Hostel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Shelter Island Hotel Reviews

Bay Club Hotel & Marina

Bay Club Hotel & Marina

10/10 Excellent
"Nice"
Maria 1-night trip
Posted 3 hours ago
Bay Club Hotel & Marina

Hotels near other Shelter Island attractions

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.
See properties

Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.
See properties

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 43 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.
How many hotels will I be able to find near Shelter Island?
Expedia has 43 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.