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Our top choices for Shelter Island hotels

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,370 reviews)
"We had great time and enjoyed our stay "
United States
sadra
The price is ฿3,910
฿4,495 total
includes taxes & fees
24 Feb - 25 Feb
Bay Club Hotel & Marina

Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (2,756 reviews)
"Nice hotel "
United States
Timothy
The price is ฿5,565
฿7,018 total
includes taxes & fees
16 Feb - 17 Feb
Humphreys Half Moon Inn

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
8.8 out of 10, Excellent, (1,587 reviews)
"Great place.very clean great for family would definitely stay there again."
United States
Joseph
The price is ฿4,203
฿4,831 total
includes taxes & fees
16 Feb - 17 Feb
Best Western Plus Island Palms Hotel & Marina

Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1,398 reviews)
"Spacious rooms, great breakfast, clean hotel, would stay here again."
United States
Pamela
The price is ฿5,838
฿6,710 total
includes taxes & fees
1 Mar - 2 Mar
Homewood Suites by Hilton San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,331 reviews)
"Our room was clean, well stocked staff was great & very comfortable bed."
United States
Benny
The price is ฿5,506
฿6,329 total
includes taxes & fees
16 Feb - 17 Feb
Courtyard by Marriott San Diego Airport/Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,717 reviews)
"Great place to stay for access to the airport, staff was super!"
Canada
Alison
The price is ฿5,259
฿6,045 total
includes taxes & fees
28 Feb - 1 Mar
Hampton Inn & Suites San Diego Airport Liberty Station

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,000 reviews)
"Super clean rooms and a great location "
United States
Mark
Sea Harbor Hotel

The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,003 reviews)
"Lovely spot would stay again "
United States
danixa
The price is ฿4,757
฿5,372 total
includes taxes & fees
2 Mar - 3 Mar
The Pearl Hotel

TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1,001 reviews)
" The hotel is very clean, and the staff are friendly and helpful"
United States
Jun
The price is ฿5,458
฿6,273 total
includes taxes & fees
8 Mar - 9 Mar
TownePlace Suites by Marriott San Diego Airport/Liberty Station

The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.6 out of 10, Excellent, (666 reviews)
"Staff was very friendly and accommodating Rooms are clean and fresh Fun games in the courtyard "
United States
Lucas
The price is ฿3,932
฿4,520 total
includes taxes & fees
22 Feb - 23 Feb
The Monsaraz San Diego, Tapestry Collection by Hilton

Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,198 reviews)
"Friendly staff, clean rooms and beautiful views. Location was great for cruise port. "
United States
Claudia
The price is ฿5,101
฿5,863 total
includes taxes & fees
8 Mar - 9 Mar
Hilton San Diego Airport/Harbor Island

Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.2 km from Shelter Island
8.2 out of 10, Very good, (1,000 reviews)
"Nice staff"
United States
Erika
The price is ฿5,944
฿8,698 total
includes taxes & fees
23 Feb - 24 Feb
Kona Kai San Diego

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.6 out of 10, Excellent, (1,723 reviews)
"Well stay again love the location"
United States
Lynette
The price is ฿3,389
฿3,889 total
includes taxes & fees
3 Mar - 4 Mar
Best Western Yacht Harbor Hotel

Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,297 reviews)
"Great room, clean property and courteous staff"
United States
Reginald D.
The price is ฿3,048
฿3,442 total
includes taxes & fees
22 Feb - 23 Feb
Comfort Inn San Diego Airport At The Harbor

Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.4 out of 10, Good, (373 reviews)
"Great staff and very friendly "
United States
Nalani
Hotel Point Loma

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.4 out of 10, Good, (1,001 reviews)
"Very nice clean and friendly staff"
United States
ELIZABETH
The price is ฿3,044
฿3,493 total
includes taxes & fees
23 Feb - 24 Feb
Ramada by Wyndham San Diego Airport

Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,000 reviews)
"Room and bathroom were very clean loved that had microwave refrigerator disappointed didn’t have coffee pot"
United States
Pedro
Hotel Aqua Mar

Sunrise Inn San Diego

Sunrise Inn San Diego
2.0 star property
1.2 km from Shelter Island
5.6 out of 10, (1,002 reviews)
"For the price and location this hotel is great. My go to when I’m down in San Diego and don’t want to break the bank "
United States
carmina
Sunrise Inn San Diego

New Cozy Studio 2 Queen Beds, Kitchen Walk to Water

New Cozy Studio 2 Queen Beds, Kitchen Walk to Water
3.0 star property
1.3 km from Shelter Island
8.0 out of 10, Very good, (1 review)
"The studio was beautiful, clean, and cozy. The only thing that I will say is that the pictures advertised show both the main home and the studio, so it is misleading as to what amenities are available in your own space. Other than that I enjoyed my stay and the owner was very prompt to respond to the few questions that I had."
United States
Fatimah
The price is ฿3,824
฿9,597 total
includes taxes & fees
18 Feb - 19 Feb
New Cozy Studio 2 Queen Beds, Kitchen Walk to Water

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (415 reviews)
"Clean rooms, decent staff, decent breakfast, good location"
United States
Minhaz
Samesun Ocean Beach - Hostel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Shelter Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Terrace/patio
Bay Club Hotel & Marina
3.5 star property
9.2
Wonderful
3,370 reviews
View
Property grounds
Humphreys Half Moon Inn
3.5 star property
9.2
Wonderful
2,756 reviews
View
Exterior
Best Western Plus Island Palms Hotel & Marina
3.0 star property
8.8
Excellent
1,587 reviews
View
Exterior
Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
9.4
Exceptional
1,398 reviews
View
Courtyard view
Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
9.2
Wonderful
1,331 reviews
View

Top Shelter Island Hotel Reviews

Hotels near other Shelter Island attractions

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 45 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.
How many hotels will I be able to find near Shelter Island?
Expedia has 45 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.