Search Hotels Near Shelter Island, San Diego

Start date: Check-in selected.
To Date
End date: Check-out

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
7 Dec - 8 Dec
Tomorrow
8 Dec - 9 Dec
Next weekend
12 Dec - 14 Dec
In two weeks
19 Dec - 21 Dec

Filter by

Guest rating
Guest rating
Star rating

Top Trending Hotels Near Shelter Island

Exterior
Bay Club Hotel & Marina

Bay Club Hotel & Marina

3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3173)
"Great stay and location!"
United States
Jason
The price is ฿3,877
฿4,456 total
includes taxes & fees
15 Dec - 16 Dec
Bay Club Hotel & Marina
Outdoor pool
Humphreys Half Moon Inn

Humphreys Half Moon Inn

3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (2686)
"Loved our stay kids loved it the views and room where perfect definitely recommend "
Canada
Skyesong
The price is ฿4,755
฿6,103 total
includes taxes & fees
14 Dec - 15 Dec
Humphreys Half Moon Inn
Theatre show
Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station

3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1347)
"Great place to stay at!"
United States
Sandy
The price is ฿5,050
฿5,805 total
includes taxes & fees
16 Dec - 17 Dec
Homewood Suites by Hilton San Diego Airport/Liberty Station
Exterior
 Hampton Inn & Suites San Diego Airport Liberty Station

 Hampton Inn & Suites San Diego Airport Liberty Station

2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1696)
"Clean, beautiful and a quiet place to stay"
United States
jennifer
The price is ฿4,314
฿4,959 total
includes taxes & fees
1 Jan - 2 Jan 2026
 Hampton Inn & Suites San Diego Airport Liberty Station
Reception
Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina

3.0 star property
0.4 km from Shelter Island
8.8 out of 10, Excellent, (1548)
"Clean room, happy, helpful staff, great resturant. It was the week we needed to get away."
United States
GERALD
The price is ฿3,804
฿4,372 total
includes taxes & fees
5 Jan - 6 Jan 2026
Best Western Plus Island Palms Hotel & Marina
View from property
Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station

3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1367)
"Lovely place to stay!"
United States
Helga
The price is ฿4,913
฿5,647 total
includes taxes & fees
14 Dec - 15 Dec
Courtyard by Marriott San Diego Airport/Liberty Station
BBQ/picnic Area
TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station

3.0 star property
2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1006)
"The staff was pleasant and helpful especially the breakfast woman who was in charged "
United States
Kenneth
The price is ฿5,428
฿6,239 total
includes taxes & fees
23 Dec - 24 Dec
TownePlace Suites by Marriott San Diego Airport/Liberty Station
Marina
Sea Harbor Hotel

Sea Harbor Hotel

2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1005)
"Good hotel "
United States
Diana
Sea Harbor Hotel
Exterior
Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island

3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1223)
"Great hotel"
United States
Maria G
The price is ฿5,207
฿5,985 total
includes taxes & fees
14 Dec - 15 Dec
Hilton San Diego Airport/Harbor Island
Property amenity
The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton

3.5 star property
1.6 km from Shelter Island
8.6 out of 10, Excellent, (615)
"Clean room with big shower. Great staff. On street parking a bit busy but still able to find a spot a block away. Nice walk to harbor and coffee, food etc. "
United States
Liza
The price is ฿4,059
฿4,666 total
includes taxes & fees
14 Dec - 15 Dec
The Monsaraz San Diego, Tapestry Collection by Hilton
Desk, blackout curtains, iron/ironing board, cots/infant beds
Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel

2.5 star property
1.7 km from Shelter Island
8.6 out of 10, Excellent, (1625)
"The breakfast options were good and the staff were very helpful."
Canada
Gail or Rob
The price is ฿3,131
฿3,592 total
includes taxes & fees
9 Dec - 10 Dec
Best Western Yacht Harbor Hotel
2 outdoor pools, open 6:00 AM to 10:00 PM, pool cabanas (surcharge)
Kona Kai San Diego

Kona Kai San Diego

4.0 star property
0.2 km from Shelter Island
8.4 out of 10, Very good, (1001)
"had a wonderful time for our honey moon here "
United States
Anna
The price is ฿6,002
฿8,814 total
includes taxes & fees
5 Jan - 6 Jan 2026
Kona Kai San Diego
Golf
DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside

3.0 star property
1.8 km from Shelter Island
8.2 out of 10, Very good, (1002)
"Great friendly staff, very nice and clean rooms. "
United States
Tim
The price is ฿4,030
฿4,632 total
includes taxes & fees
17 Dec - 18 Dec
DoubleTree by Hilton San Diego Bayside
Exterior
Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor

3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1176)
"The location was very accessible. "
United States
ALI REZA
The price is ฿2,905
฿3,281 total
includes taxes & fees
4 Jan - 5 Jan 2026
Comfort Inn San Diego Airport At The Harbor
In-room safe, individually decorated, individually furnished, desk
Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport

3.0 star property
1.6 km from Shelter Island
7.4 out of 10, Good, (1005)
"Close to airport and the water, free on site parking."
United States
Christina
The price is ฿2,840
฿3,259 total
includes taxes & fees
15 Dec - 16 Dec
Ramada by Wyndham San Diego Airport
Suite, 1 Queen Bed with Sofa bed, Kitchenette | Blackout curtains, iron/ironing board, free WiFi, bed sheets
Hotel Point Loma

Hotel Point Loma

2.0 star property
1.5 km from Shelter Island
7.4 out of 10, Good, (342)
"Aside from the AMAZING staff, the clean rooms, and the great location.. they were extremely accommodating for my recent stay straight out of the hospital and with my service dog. I’ve stayed there before and will most definitely stay there again as long as they have vacancy. 10/10 recommend this place! "
United States
Jamina
Hotel Point Loma
Front of property – evening/night
Hotel Aqua Mar

Hotel Aqua Mar

2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1002)
"Great place! Awesome staff super clean "
United States
Keyla
Hotel Aqua Mar
Front of property
Sunrise Inn San Diego

Sunrise Inn San Diego

2.0 star property
1.2 km from Shelter Island
5.6 out of 10, (1004)
"For the price and location this hotel is great. My go to when I’m down in San Diego and don’t want to break the bank "
United States
carmina
Sunrise Inn San Diego
Bed In 8-Bed Dorm | Free WiFi, bed sheets
Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel

2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (366)
"My stay was awesome"
United States
Fred
Samesun Ocean Beach - Hostel
Property grounds
The Inn at Sunset Cliffs

The Inn at Sunset Cliffs

2.5 star property
Ocean Beach, 3.6 km from Shelter Island
9.2 out of 10, Wonderful, (1005)
"Perfect location, units are clean and comfy. Highly recommend- will definitely be back!"
United States
Jennifer
The price is ฿6,255
฿7,052 total
includes taxes & fees
14 Dec - 15 Dec
The Inn at Sunset Cliffs
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Shelter Island Hotel Reviews

The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton

10/10 Excellent
"Convenient location, beautiful and modern decor, friendly staff, delicious food and drinks.. it was truly an amazing birthday trip. There was a slight hiccup with the air conditioning, but it was fixed within 24 hours AND they were super generous enough to provide a discount on our entire stay. (this was not asked for, but was given upon check out) Thank you guys!! We’ll be back! "
Rosemary 2-night trip
Posted 7 days ago
The Monsaraz San Diego, Tapestry Collection by Hilton
Kona Kai San Diego

Kona Kai San Diego

10/10 Excellent
"Room nicely appointed. Great view of boats. Service and food at conference was very good. I had a very enjoyable stay"
Barbara 2-night trip
Posted 1 month ago
Kona Kai San Diego

Hotels near other Shelter Island attractions

Sunset Cliffs Natural Park, San Diego, California

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.
See properties
Favorite sunset
Photo by Bikini Traveler
Open Photo by Bikini Traveler

Breakers Beach

Why not spend a lazy afternoon at Breakers Beach during your trip to San Diego? Experience the acclaimed theatre scene and entertainment choices in this walkable area.
See properties

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 44 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Kona Kai San Diego.
How many hotels will I be able to find near Shelter Island?
Expedia has 44 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

Explore a world of travel with Expedia