San Juan Island Packages (Flight + Hotel)

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Top San Juan Island Flight + Hotel Deals

Price found within the past 48 hours. Click for updated prices.
The Belltown Inn

The Belltown Inn

2.5 out of 5
Downtown Seattle
Price was ฿32,465, price is now ฿25,113 per person
฿25,113
per person
26 Jun - 28 Jun
found 9 hours ago
Return flight included
Orange County (SNA) to Seattle (SEA)
9.4/10 Exceptional! (4,454 reviews)
The staff was great, excellent location for easy walking to dining and attractions, comfortable bed, very cool rooftop access. Will be back!

Reviewed on 6 May 2026

Fairmont Olympic Hotel

Fairmont Olympic Hotel

5 out of 5
Downtown Seattle
Save 100% on your flight
Price was ฿53,698, price is now ฿38,085 per person
฿38,085
per person
26 Jun - 28 Jun
found 9 hours ago
Return flight included
Orange County (SNA) to Seattle (SEA)
9.2/10 Wonderful! (1,622 reviews)
Fantastic property in Seattle. Beautiful grounds/amenities. Could use some updating here and there… but overall a great spot. Location is excellent.

Reviewed on 6 May 2026

Mediterranean Inn

Mediterranean Inn

3 out of 5
Downtown Seattle
Price was ฿34,776, price is now ฿26,466 per person
฿26,466
per person
26 Jun - 28 Jun
found 9 hours ago
Return flight included
Orange County (SNA) to Seattle (SEA)
9.4/10 Exceptional! (5,766 reviews)
In the middle of Seattle. Close to many things to do and close to the cruise port.

Reviewed on 6 May 2026

The Edgewater Hotel

The Edgewater Hotel

4 out of 5
Downtown Seattle
Price was ฿36,740, price is now ฿29,049 per person
฿29,049
per person
26 Jun - 28 Jun
found 9 hours ago
Return flight included
Orange County (SNA) to Seattle (SEA)
9/10 Wonderful! (1,205 reviews)
The location was great for the Clipper, and was an easy 40 minute walk to the ball park. Staff were helpful, hotel was clean, food was good. Not a lot of road noise, the train went by regularly but it wasnt bothersome. A cool iconic hotel.

Reviewed on 2 May 2026

Ändra Hotel Seattle - MGallery Collection

Ändra Hotel Seattle - MGallery Collection

4 out of 5
Downtown Seattle
Price was ฿38,108, price is now ฿30,531 per person
฿30,531
per person
26 Jun - 28 Jun
found 9 hours ago
Return flight included
Orange County (SNA) to Seattle (SEA)
9.4/10 Exceptional! (1,215 reviews)
Called in advance to make sure they had a pack in play and they said they did. When I went to put my 11 month old to sleep the pack in play was broken and I was told that was the only one they had. Told me if I wanted one to go buy it myself. Everything around was closed. Very tough night sleep with baby.

Reviewed on 5 May 2026

Top hotels in San Juan Island

Friday Harbor Suites

Friday Harbor Suites

2.5 out of 5
680 Spring Street Friday Harbor WA
Fully refundableReserve now, pay when you stay
The price is ฿5,771 per night from 17 May to 18 May
฿5,771
฿6,386 total
17 May - 18 May
includes taxes & fees
8.6/10 Excellent! (1,005 reviews)
yes

Reviewed on 3 May 2026

Friday Harbor Suites
Earthbox Inn & Spa

Earthbox Inn & Spa

3 out of 5
410 Spring Street Friday Harbor WA
The price is ฿7,089 per night from 18 May to 19 May
฿7,089
฿7,844 total
18 May - 19 May
includes taxes & fees
8.8/10 Excellent! (1,002 reviews)
Only a quick overnight, but they took dogs. Higher priced, and much nicer than what we needed, but would go back anytime. Spent a lot of time in Friday Harbor over decades, and never knew this place was there. Off season, so hard to guess what like in high season, but excellent experience.

Reviewed on 4 May 2026

Earthbox Inn & Spa
Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
9.8/10 Exceptional! (95 reviews)
Didn't use the hot tub. The breakfast was just what I ordered and it was excellent.

Reviewed on 31 Mar 2026

Get rates
Inn to the Woods B&B
See all 856 properties in San Juan Island
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

What to do in San Juan Island

Friday Harbor Frenzy Scavenger Hunt

Friday Harbor Frenzy Scavenger Hunt

฿926
per adult
Friday Harbor Frenzy Scavenger Hunt
Amazing Sunsets top of giant trees!

Sunset Canopy Climb on Lopez Island

฿8,781
per adult
Sunset Canopy Climb on Lopez Island
Victoria: Secret Beaches and Islands SUP Tour

Victoria: Marine Wildlife Guided SUP Adventure

฿1,726
per adult
Victoria: Marine Wildlife Guided SUP Adventure
See all activities in San Juan Island

Frequently asked questions

Can I cancel my flight booking to San Juan Island due to COVID-19?
If you haven't booked yet, scan the terms and conditions of the airfare you're considering. If you've already locked in your flight to San Juan Island, click through to our Customer Service Portal. The information here will help determine which COVID-19 policies are applicable to your reservation and guide you with the next steps.
What's the best way to find cheap flights to San Juan Island that have flexible change policies?
At Expedia, we've been channeling our inner yoga master to provide you with the most flexible airfares in town. Simply click on "No change fee" directly beneath the "Flexible change policies" subheading to find your perfect flight to San Juan Island.
What are some of the general tips for travellers to San Juan Island during the COVID-19 outbreak?
With the continuation of the COVID-19 outbreak, travelling now comes with a few extra challenges. Make a note of these valuable tips before jumping on your plane to San Juan Island:
  • Before you book a flight, find out if any travel restrictions apply — in both your destination and origin. Get up-to-date information by reviewing government websites.
  • Wear a face mask during airport screening. A TSA employee will require you to lower your mask temporarily for identification purposes.
  • Instead of handing a TSA officer your boarding pass, place it directly on the reader yourself. When that's done, hold it up for inspection.
  • You can take one container of hand sanitizer up to 12 oz (350 ml) in your carry-on baggage. You'll need to remove it for screening.
  • Put any personal items (e.g, keys, phone and coins) in your carry-on instead of a bin to minimize handling during the screening process.
  • Separate any food you're carrying for X-ray scanning. Food items often set off the alarm. Placing them in a clear plastic bag and into a bin reduces the need for a TSA officer to handle and inspect your belongings.

Which airlines fly to San Juan Island?
Let Alaska Airlines get you there. This popular carrier operates 9722 flights a month to Seattle - Tacoma Intl. Airport (SEA), a San Juan Island gateway.
How can I find cheap tickets to San Juan Island?
A helpful strategy for scoring cheap fares is to be flexible with your travel dates. Begin with searching for your flight to San Juan Island, then click on the "flexible dates" link for a list of prices for nearby days. Another good tip? Book in advance. For an idea of fares, was the best price for a flight to San Juan Island in the last seven days.
How much is a flight to San Juan Island?
You could have scored a return air ticket to San Juan Island from anywhere between and in the last seven days. For one-way trips leaving from (), the lowest amount paid during this period was just .
What are the most popular airports to fly into in San Juan Island?
Pack your suitcase and fly into Seattle - Tacoma Intl. Airport (SEA), San Juan Island's main flight hub. Book a fare on one of the 17599 flights that touch down here every month.
When is the cheapest time to fly to San Juan Island?
If you'd prefer to spend your money exploring San Juan Island rather than on getting there, jet off early in the week. The cheapest day to fly is generally Tuesday, with Monday close behind. With many folks keeping their travel to weekends, Saturday often has the costliest airfares.
How much is a plane ticket to San Juan Island?
In the last seven days, plane fares to San Juan Island cost between and . The early bird catches the worm, so land yourself a great deal today.
Which airlines with flights to San Juan Island employ COVID-19 cleanliness policies?
As people begin travelling once again, the majority of airlines have introduced physical distancing and other preventive measures to reduce the spread of COVID-19. Here are just some of them:
  • Alaska Airlines - this airline is known for providing passenger masks and cleaning with disinfectant.
  • Delta - this airline is known for electrostatic cleaning and cleaning with disinfectant.
  • Southwest Airlines - this airline is known for providing passenger masks and cleaning with disinfectant.

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* Savings based on package bookings compared to the price of the same components booked separately. Savings not available on all packages.