Search Hotels Near Shelter Island, San Diego

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Check prices for these dates

Next weekend
12 Jun - 14 Jun
In two weeks
19 Jun - 21 Jun

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Our top choices for Shelter Island hotels

Exterior

1. Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,608 reviews)
"Great location. Comfortable rooms and great views."
United States
Tesia
The price is ฿5,746
฿6,605 total
includes taxes & fees
14 Jun - 15 Jun
Best Western Plus Island Palms Hotel & Marina
Property grounds

2. Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (3,003 reviews)
"Excellent stay!"
United States
Ashley
The price is ฿6,690
฿8,346 total
includes taxes & fees
8 Jun - 9 Jun
Humphreys Half Moon Inn
Terrace/patio

3. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
2.0 star property
1.2 km from Shelter Island
9.0 out of 10, Wonderful, (37 reviews)
"Near airport."
United States
Justin
The price is ฿3,512
฿3,960 total
includes taxes & fees
29 Jun - 30 Jun
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
Courtyard view

4. Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,298 reviews)
"Great location, good parking, great staff."
United States
Rosemary
The price is ฿5,826
฿6,697 total
includes taxes & fees
14 Jun - 15 Jun
Courtyard by Marriott San Diego Airport/Liberty Station
Lobby

5. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,726 reviews)
"Good location, clean room and nice staff. A great place to stay."
United States
Patricia
The price is ฿5,621
฿6,461 total
includes taxes & fees
30 Jun - 1 Jul
Hampton Inn & Suites San Diego Airport Liberty Station
Front of property

6. The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,001 reviews)
"Great hotel, good soap, very nice staff, fun pool!"
United States
Joe
The price is ฿5,745
฿6,489 total
includes taxes & fees
6 Jul - 7 Jul
The Pearl Hotel
Lobby

7. TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1,014 reviews)
"Great location! Nice walk to Liberty Station Public Market for dinner 😊"
United States
John
The price is ฿6,985
฿8,028 total
includes taxes & fees
14 Jun - 15 Jun
TownePlace Suites by Marriott San Diego Airport/Liberty Station
Gift shop

8. Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,016 reviews)
"The room we had was comfortable and modern and the location is terrific!"
United States
Paul
The price is ฿4,038
฿4,553 total
includes taxes & fees
8 Jun - 9 Jun
Sea Harbor Hotel
Terrace/patio

9. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,212 reviews)
"I enjoyed to fresh sent of the hotel and the very friendly workers :)"
United States
christina
The price is ฿5,352
฿6,151 total
includes taxes & fees
14 Jun - 15 Jun
Hilton San Diego Airport/Harbor Island
Standard Room, 2 Queen Beds, Non Smoking, Microwave | Desk, blackout curtains, iron/ironing board, cots/infant beds

10. Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.4 out of 10, Very good, (1,916 reviews)
"The rooms were well kept and the breakfast was great!"
United States
Jessica
The price is ฿5,149
฿5,909 total
includes taxes & fees
17 Jun - 18 Jun
Best Western Yacht Harbor Hotel
Bar (on property)

11. DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.4 out of 10, Very good, (1,035 reviews)
"Great restaurants"
United States
Gary
The price is ฿5,352
฿6,151 total
includes taxes & fees
1 Jul - 2 Jul
DoubleTree by Hilton San Diego Bayside
Room, 1 King Bed, Non Smoking (Harbor View) | Beach/ocean view

12. Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.6 out of 10, Good, (1,002 reviews)
"Parking was handy Staff very kind, thoughtful and helpful"
Canada
carla
The price is ฿4,042
฿4,638 total
includes taxes & fees
10 Jun - 11 Jun
Ramada by Wyndham San Diego Airport
Standard Room | Blackout curtains, iron/ironing board, free WiFi, bed sheets

13. Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.6 out of 10, Good, (427 reviews)
"Nice stay for 2 nights. Close to coffee shops and restaurants."
United States
ERNESTO
The price is ฿2,364
฿2,666 total
includes taxes & fees
8 Jun - 9 Jun
Hotel Point Loma
Exterior detail

14. Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,002 reviews)
"fairly priced hotel"
United States
Bruce
The price is ฿2,231
฿2,516 total
includes taxes & fees
8 Jun - 9 Jun
Hotel Aqua Mar
Lobby sitting area

15. Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (511 reviews)
"Excellent stay, clean and nice people!"
United States
Christine
The price is ฿1,918
฿2,167 total
includes taxes & fees
21 Jun - 22 Jun
Samesun Ocean Beach - Hostel
Property grounds

16. The Inn at Sunset Cliffs

The Inn at Sunset Cliffs
2.5 star property
Ocean Beach, 3.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,000 reviews)
"Amazing location and beach view"
United States
Mariam
The price is ฿7,849
฿8,849 total
includes taxes & fees
18 Jun - 19 Jun
The Inn at Sunset Cliffs
Deluxe 2 King Bedrooms, Multiple Beds, Sleeps 11ppl | Terrace/patio

17. City24 Hotel Little Italy Mission Hills

City24 Hotel Little Italy Mission Hills
4.5 star property
5.9 km from Shelter Island
9.8 out of 10, Exceptional, (160 reviews)
"Nice and very friendly staff was a great stay"
United States
Alexander
The price is ฿4,649
฿6,357 total
includes taxes & fees
15 Jun - 16 Jun
City24 Hotel Little Italy Mission Hills
Exterior

18. California Dreams Hostel - Ocean Beach

California Dreams Hostel - Ocean Beach
2.0 star property
Point Loma Heights, 3.2 km from Shelter Island
8.8 out of 10, Excellent, (219 reviews)
"Great place"
United States
BERNARDO
The price is ฿3,734
฿4,210 total
includes taxes & fees
8 Jun - 9 Jun
California Dreams Hostel - Ocean Beach
Superior Room, 1 King Bed, Private Bathroom, City View (Self check-in) | Desk, laptop workspace, blackout curtains, iron/ironing board

19. Keating Hotel By At Mine Hospitality

Keating Hotel By At Mine Hospitality
2.0 star property
East Village, 6.8 km from Shelter Island
9.6 out of 10, Exceptional, (20 reviews)
"Great experience Awesome hotel to stay Clean and comfortable beds Love the bath I would 100% recommend this hotel Thank you I will eventually return"
United States
Javie Alejandro
The price is ฿1,448
฿4,221 total
includes taxes & fees
8 Jun - 9 Jun
Keating Hotel By At Mine Hospitality
Exterior

20. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
5.5 km from Shelter Island
9.2 out of 10, Wonderful, (1,073 reviews)
"Staff was so great nice rooms really great stay"
United States
Amelia
The price is ฿5,247
฿6,032 total
includes taxes & fees
8 Jun - 9 Jun
Holiday Inn Express San Diego Airport - Old Town by IHG
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Compare popular hotels close to Shelter Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Best Western Plus Island Palms Hotel & Marina
3.0 star property
9.0
Wonderful
1,608 reviews
View
Property grounds
Humphreys Half Moon Inn
3.5 star property
9.2
Wonderful
3,003 reviews
View
Terrace/patio
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
2.0 star property
9.0
Wonderful
37 reviews
View
Courtyard view
Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
9.2
Wonderful
1,298 reviews
View
Lobby
Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
9.2
Wonderful
1,726 reviews
View

Top Shelter Island Hotel Reviews

Sheraton San Diego Resort

Sheraton San Diego Resort

10/10 Excellent
"The newly renovated lobby, restaurants, and rooms in the Marina tower were outstanding. Food very good. We had a beautiful view from our very nice room on the 12th floor. The staff was excellent- from shuttle drivers, to front desk, to receptionist in the bar, bartender, pool attendants, etc. We travel often and were so pleased. The pools were beautiful, sparkling water. The location on Harbor Island was beautiful and many excellent restaurants within walking distance. We’ll be coming back! Be sure to ask for a renovated room with a view."
Ann Elizabeth 7-night trip
Posted 2 hours ago
Sheraton San Diego Resort

Hotels near other Shelter Island attractions

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.
See properties

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 37 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Kona Kai San Diego.
How many hotels will I be able to find near Shelter Island?
Expedia has 37 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.