The Best Hotels Closest to Boot Key Harbor in Marathon - 2026 Updated Prices

Our top choices for Boot Key Harbor hotels

Yacht Haven Marina

2.2 km from Boot Key Harbor

Cheryl

฿8,714 total

includes taxes & fees

8 Jun - 9 Jun

Captain Pips Marina & Hideaway

1.2 km from Boot Key Harbor

sam

฿5,160 total

includes taxes & fees

16 Jun - 17 Jun

On the beach, beach cabanas, sun-loungers

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

0.8 km from Boot Key Harbor

Terry

฿7,971 total

includes taxes & fees

28 Jun - 29 Jun

On the beach, sun-loungers, beach umbrellas, beach towels

Isla Bella Beach Resort & Spa

2.4 km from Boot Key Harbor

Anna

฿10,700 total

includes taxes & fees

30 Jun - 1 Jul

Premium bedding, soundproofing, iron/ironing board, free WiFi

Knight's Key Suites

2.7 km from Boot Key Harbor

Raghavan

฿4,167 total

includes taxes & fees

16 Jun - 17 Jun

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

1 km from Boot Key Harbor

Kenier

฿7,460 total

includes taxes & fees

23 Jun - 24 Jun

Skipjack Resort & Marina

1.7 km from Boot Key Harbor

Randall

฿7,866 total

includes taxes & fees

3 Jun - 4 Jun

Tropical Cottages

2.9 km from Boot Key Harbor

Andrea

฿4,717 total

includes taxes & fees

4 Jun - 5 Jun

Banana Bay Resort & Marina

1.6 km from Boot Key Harbor

Felix

฿6,728 total

includes taxes & fees

1 Jul - 2 Jul

Tranquility Bay Beachfront Hotel and Resort

0.7 km from Boot Key Harbor

maybelis

฿11,950 total

includes taxes & fees

28 Jun - 29 Jun

Aqua Lodge Rentals At Coconut Cay

3.9 km from Boot Key Harbor

Stephanie

฿12,402 total

includes taxes & fees

3 Jun - 4 Jun

Private beach, sun-loungers, beach towels, kayaking

Seascape Resort & Marina

4.1 km from Boot Key Harbor

Jeffrey

฿8,144 total

includes taxes & fees

15 Jun - 16 Jun

Premium Room, 1 King Bed, Lanai, Lagoon View (Kitchenette) | View from room

Kingsail Resort

3.6 km from Boot Key Harbor

Charlie

฿3,948 total

includes taxes & fees

4 Jun - 5 Jun

Bonefish Bay Motel

8.1 km from Boot Key Harbor

Han

฿4,351 total

includes taxes & fees

7 Jun - 8 Jun

Fairfield Inn & Suites by Marriott Marathon Florida Keys

8.3 km from Boot Key Harbor

peggy

฿6,180 total

includes taxes & fees

8 Jun - 9 Jun

Coconut Cay Resort & Marina

3.7 km from Boot Key Harbor

Donald

฿5,147 total

includes taxes & fees

3 Jun - 4 Jun

Hampton Inn Marathon - Florida Keys

8.5 km from Boot Key Harbor

Jorge

฿6,092 total

includes taxes & fees

28 Jun - 29 Jun

2 outdoor pools, open 8 AM to 9 PM, pool umbrellas, pool loungers

Glunz Ocean Beach Hotel & Resort

8.3 km from Boot Key Harbor

Angus

฿7,943 total

includes taxes & fees

2 Jun - 3 Jun

Grassy Flats Resort & Beach Club

15.6 km from Boot Key Harbor

Shonlyn

฿9,805 total

includes taxes & fees

4 Jun - 5 Jun

Siesta Motel

3.9 km from Boot Key Harbor

EDHAYA CHANDRAN

฿3,703 total

includes taxes & fees

4 Jun - 5 Jun

View all properties

Compare popular hotels close to Boot Key Harbor

Property	Property class	Guest rating
Yacht Haven Marina	2.0 star property	9.6 Exceptional 319 reviews	View
Captain Pips Marina & Hideaway	3.0 star property	9.0 Wonderful 1,002 reviews	View
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys	3.0 star property	9.0 Wonderful 1,005 reviews	View
Isla Bella Beach Resort & Spa	5.0 star property	9.2 Wonderful 1,163 reviews	View
Knight's Key Suites	3.0 star property	9.0 Wonderful 1,198 reviews	View

Top Boot Key Harbor Hotel Reviews

Kingsail Resort

10/10 Excellent

"Great stay for the price"

Yacht Haven Marina

10/10 Excellent

"We had an amazing time during our stay at Yatch Haven. The house-boat was more spacious than expected with everything that we needed. They have kayaks and bikes you can grab (first come, first serve) which contributed to a wonderful vacation! We even got to see a manatee! Sombrero Beach is very close which was a plus."

Isla Bella Beach Resort & Spa

10/10 Excellent

"This property is top notch! We are in love and wish we'd found it earlier. Everyone was so nice and helpful. From registration to pool/food attendants, maintenance, . .... Everyone was so nice. The facilities are beautiful and everything you need is there! Highly recommend this resort and if we come to the Keys again, we will absolutely be staying here!!!!!"

Tranquility Bay Beachfront Hotel and Resort

8/10 Good

"The property location view is beautiful that is what you pay for, we stayed in the 2 bedroom villas and they are well past their prime and in need of a major update, everything is old, outdated and rundown. The adult pool needs new umbrellas ours broke while laying under it, things in the villa didn’t work and seemed like everything f was from the originally opening date but, too much to list just know that going in. The sunset views are stellar but, we won’t be back until it’s renovated."

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

6/10 Okay

"The location was okay, but not any place we'd revisit. There's a pool in the main lobby area and another that is where the rooms are. That one doesn't have pool service and this is the first resort that we've been to that doesn't have towels available at the pool. Unknowingly to us, there were towels in the cabinet but we never opened that. They have a coffee/snack bar that I was told closed at 11. I was really looking forward to an iced coffee and just thought it was strange that the hours weren't longer."

Hotels near other Boot Key Harbor attractions

The Turtle Hospital

4.6/5 (946 reviews)

Explore the campus of The Turtle Hospital as part of your travels around Marathon. Stroll along the area's marina or simply savour its seafood restaurants.

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Frequently asked questions

What's the area like around Boot Key Harbor?

Boot Key Harbor is located in Marathon. Travellers love the area for its beautiful beaches, top seafood restaurants and dolphin watching opportunities. If you're looking for a convenient place to stay, take a look at the 212 hotels and other accommodation options you'll find within a mile.

Where is the best place to stay near Boot Key Harbor?

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys is one of the top choices for your stay based on our traveller data, and this hotel offers 2 outdoor pools and 2 bars. It's located just a short 0.5 mi (0.8 km) from Boot Key Harbor. Other good options within a short distance include Tranquility Bay Beachfront Hotel and Resort and Faro Blanco Resort Marathon Florida Keys, Curio by Hilton.

How many hotels will I find close to Boot Key Harbor?

Expedia has 212 hotels and other accommodation options within a mile from Boot Key Harbor.

If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?

Yes! Most hotel reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, it might still be possible to cancel it and be given a refund within a 24-hour period of your booking. Add dates, click "Search", then filter by "fully refundable" to review top deals close to Boot Key Harbor.

What can I see and do near Boot Key Harbor?

Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.

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Our top choices for Boot Key Harbor hotels

Yacht Haven Marina

Captain Pips Marina & Hideaway

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Isla Bella Beach Resort & Spa

Knight's Key Suites

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

Skipjack Resort & Marina

Tropical Cottages

Banana Bay Resort & Marina

Tranquility Bay Beachfront Hotel and Resort

Aqua Lodge Rentals At Coconut Cay

Seascape Resort & Marina

Kingsail Resort

Bonefish Bay Motel

Fairfield Inn & Suites by Marriott Marathon Florida Keys

Coconut Cay Resort & Marina

Hampton Inn Marathon - Florida Keys

Glunz Ocean Beach Hotel & Resort

Grassy Flats Resort & Beach Club

Siesta Motel

Compare popular hotels close to Boot Key Harbor

Top Boot Key Harbor Hotel Reviews

Kingsail Resort

Hotels near other Boot Key Harbor attractions

The Turtle Hospital

Frequently asked questions