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Our top choices for Yakushima hotels

Garden
Sen-no-ie

Sen-no-ie

Sen-no-ie
2.5 star property
Yakushima
10.0 out of 10, Exceptional, (14)
This inviting guesthouse offers travellers free WiFi and parking with easy access to Yaku Shrine. Surrounded by a garden and featuring a terrace, Sen-no-ie provides daily housekeeping and sits near Yakushima Environmental Culture Village Centre.
"Beautiful location, lovely staff, charming accommodation - highly recommended!"
United Kingdom
Robert
The price is ฿3,442
฿3,786 total
5 Jan - 6 Jan 2026
Sen-no-ie
Cottage Type B | Down duvets, individually decorated, individually furnished
Cottage Morinokokage

Cottage Morinokokage

Cottage Morinokokage
2.5 star property
Yakushima
9.4 out of 10, Exceptional, (82)
Serene cottage retreat with garden and terrace in beautiful Yakushima. Located near Anbo River and Yakusugi Nature Museum, this comfortable guesthouse provides complimentary WiFi and parking for adventures across the island.
"Excellent view. Charming and spacious rooms. Owner and staff were kind and generous. Helped us navigate the bus system and dining in Yakushima."
United States
Christopher
The price is ฿3,089
฿3,397 total
13 Jan - 14 Jan 2026
Cottage Morinokokage
Property entrance
Yakushima Guesthouse Suginoko

Yakushima Guesthouse Suginoko

Yakushima Guesthouse Suginoko
2.5 star property
Yakushima
9.2 out of 10, Wonderful, (46)
Surrounded by coastal beauty, this serene guesthouse offers free full breakfast served daily, complimentary WiFi and parking. Located near Anbo River and Yakusugi Nature Museum, with convenient access to Yakushima Airport just 7 minutes away.
"Amazing staff. And the lunch bentos were delicious. Highly recommend."
Canada
Chris
The price is ฿1,712
฿1,883 total
6 Jan - 7 Jan 2026
Yakushima Guesthouse Suginoko
Hot springs
Yakushima Jomon No Yado Manten

Yakushima Jomon No Yado Manten

Yakushima Jomon No Yado Manten
3.0 star property
Yakushima
8.6 out of 10, Excellent, (102)
Discover the tranquil beauty of Yakushima Island from this authentic ryokan featuring natural hot springs. Free WiFi and parking make exploring nearby Anbo River and Wilson Stump convenient for nature enthusiasts.
"The French Restaurant there is not to be missed"
Hong Kong SAR China
SZE WAI
Yakushima Jomon No Yado Manten
Japanese Style Room | Balcony
Pension Sea Forest

Pension Sea Forest

Pension Sea Forest
3.0 star property
Yakushima
7.4 out of 10, Good, (12)
A peaceful retreat on Yakushima Island, just 15 minutes from the airport and close to Yaku Shrine. Free WiFi and parking enhance your stay while exploring nearby cultural attractions and natural wonders.
"Personnes accueillante et prévenante gerant l'établissement, un cadre magnifique. Proche dun arrêt de bus (2min à pieds). Un petit Izakaya de très bonne qualité à côté. "
United States
Julien
Pension Sea Forest
In-room safe, desk, free WiFi, bed sheets
Tashiro Bekkan

Tashiro Bekkan

Tashiro Bekkan
2.5 star property
Yakushima
8.4 out of 10, Very good, (44)
Experience authentic Japanese hospitality at this ryokan near Yaku Shrine. Hiking trails await outdoor enthusiasts, while amenities include free WiFi and parking. The 24-hour front desk ensures convenience throughout your stay on this enchanting island.
"This was a very nice place to stay in Miyanoura. The breakfast and dinner service was unexpected. Both were interesting and satisfying. The steam bath was excellent after a day of hiking. The staff here were very nice and helpful."
Canada
John Andrew
Tashiro Bekkan
Flat-screen TV, fireplace, video game console, DVD player
Yakusugi House

Yakusugi House

Yakusugi House
2.5 star property
Yakushima
9.2 out of 10, Wonderful, (11)
Outdoor enthusiasts will love this family-friendly holiday home near Yaku Shrine. The property offers a kitchen, fireplace, and nearby hiking trails. Kayaking and scuba diving await, with bicycle rentals available for island exploration.
"Many appliances to use including coin laundry and dryer, spacious rooms and kitchen with plenty of things to cook with. Lovely traditional style Japanese home. "
Australia
Umi
The price is ฿1,325
฿1,458 total
18 Dec - 19 Dec
Yakusugi House
Front of property – evening/night
Yakushima Green Hotel

Yakushima Green Hotel

Yakushima Green Hotel
3.0 star property
Yakushima
8.8 out of 10, Excellent, (163)
Situated along Yakushima's coast, this welcoming hotel offers a rejuvenating sauna experience and convenient on-site dining. Just minutes from Anbo River and Yakusugi Nature Museum, guests appreciate the helpful staff, free WiFi, and complimentary parking.
"Ocean view was very nice. shopping limited"
United States
Jesper
The price is ฿3,847
฿4,232 total
17 Dec - 18 Dec
Yakushima Green Hotel
Deluxe Villa | Balcony view
Cottage HANA MANA

Cottage HANA MANA

Cottage HANA MANA
2.5 star property
Yakushima
10.0 out of 10, Exceptional, (6)
Set near Yakushima Botanical Research Park, this inviting guesthouse offers free WiFi and parking. Rooms include refrigerators and microwaves for convenience. Kayaking and snorkelling await nearby, with Toroki Falls just a short trip from this island sanctuary.
"Amazing cottage set in a beautiful location with views of the surrounding mountains and forests that reminded us of Hawaii. The property features an outdoor onsen, a well equipped kitchen and is comfortably furnished throughout. Hana Mana is the perfect getaway for a couple or family visiting Yakushima."
United States
Tom
Cottage HANA MANA
Hot springs
2R Yakushima

2R Yakushima

2R Yakushima
3.0 star property
Yakushima
The price is ฿2,991
฿3,290 total
5 Jan - 6 Jan 2026
2R Yakushima
Lobby lounge
Yakushima Iwasaki Hotel

Yakushima Iwasaki Hotel

Yakushima Iwasaki Hotel
3.5 star property
Yakushima
8.2 out of 10, Very good, (34)
A tranquil oceanfront retreat with natural hot springs and a sauna. Located near Mt. Mocchomudake and Onoaida Onsen, this Yakushima hotel offers massage services, a fitness centre, and an on-site café for post-hiking refreshment.
"Stunning views, can walk to hiking in National Park, very helpful staff"
United States
Louise
The price is ฿6,597
฿7,257 total
4 Jan - 5 Jan 2026
Yakushima Iwasaki Hotel
Outdoor pool
sankara hotel & spa Yakushima

sankara hotel & spa Yakushima

sankara hotel & spa Yakushima
4.0 star property
Yakushima
9.8 out of 10, Exceptional, (102)
Embrace seaside tranquility at this spa hotel in Yakushima, offering Thai massages and body treatments. The outdoor pool with poolside bar complements 2 restaurants including ayana serving French cuisine. Free breakfast, WiFi, and parking enhance your stay near Yakushima Botanical Research Park.
"An amazing service, reception are super helpful, rooms are luxurious, modern and ultimately clean. Great poo, great spa, dinner at the Michelin restaurant was fantastic. "
United Kingdom
eran
The price is ฿16,007
฿17,607 total
4 Jan - 5 Jan 2026
sankara hotel & spa Yakushima
Lobby sitting area
Hotel Yakushima Sanso

Hotel Yakushima Sanso

Hotel Yakushima Sanso
3.0 star property
Yakushima
8.0 out of 10, Very good, (12)
Immerse yourself in tranquil Yakushima island charm at this welcoming hotel near Yakusugi Nature Museum and Anbo River. Enjoy complimentary WiFi and parking while using this convenient base for your Japanese nature adventures.
"古いホテルです。フロントは6階でその下に部屋があります。高低差のある建物で、入ったのが1階で戸惑いました。ただスタッフは親切だったのでよかったです。"
Japan
Chisato
Hotel Yakushima Sanso
Hot springs
samana hotel Yakushima

samana hotel Yakushima

samana hotel Yakushima
3.5 star property
Yakushima
9.8 out of 10, Exceptional, (110)
Immerse in rejuvenating hot springs at this peaceful hotel near Onoaida Onsen. Free WiFi and parking add convenience while exploring nearby Mt. Mocchomudake. Just 38 minutes from Yakushima Airport, this island haven offers the perfect natural escape.
"Spacious rooms, clean bathrooms and very friendly staff. Self serve laundry was a huge plus. Breakfast buffet had a little of options and was well stocked. We enjoyed our two nights here and would return to the same hotel if ever back in Yakushima. "
United States
Mary
The price is ฿10,992
฿12,091 total
24 Dec - 25 Dec
samana hotel Yakushima
Luxury Room, Non Smoking, Garden View | Free WiFi
Shimayado-HOPE

Shimayado-HOPE

Shimayado-HOPE
3.0 star property
Minamitane
Shimayado-HOPE
Outdoor pool, open 9:00 AM to 6:00 PM, pool loungers
Tanegashima Iwasaki Hotel

Tanegashima Iwasaki Hotel

Tanegashima Iwasaki Hotel
3.0 star property
Minamitane
9.0 out of 10, Wonderful, (19)
Situated near Tanegashima Akagomekan and Cape Kadokura, this Japanese coastal retreat offers an outdoor pool with a dedicated children's area. Enjoy a meal at the on-site restaurant after exploring local attractions, with free WiFi and parking available.
"レンタカーでないと訪れる事が出来ないが、素晴らしいホテルでした"
Japan
??
The price is ฿3,341
฿3,675 total
17 Dec - 18 Dec
Tanegashima Iwasaki Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Stay near popular Yakushima attractions

Yakushima National Park

Explore the great outdoors at Yakushima National Park, a lovely green space in Yakushima. Wander the seaside and forests while you're in the area.
See properties

Jomonsugi

4.6/5 (17 reviews)
Find out about the history of Miyanoura with a stop at Jomonsugi. Discover the area's mountain views and waterfalls.
See properties

Learn more about Yakushima

Ancient cedar forests and moss-covered trails await in Yakushima's UNESCO-protected wilderness, home to thousand-year-old Jōmon Sugi trees. Hike to cascading waterfalls in Shiratani Unsuikyo Ravine or spot loggerhead turtles nesting along Nagata Inaka beach between May and August.

See all hotels in Yakushima
Enchanted Forests of Yakushima, Japan.; Shutterstock ID 447511465

Top Yakushima Hotel Reviews

Yakushima Iwasaki Hotel

Yakushima Iwasaki Hotel

10/10 Excellent
"I ended up with a sinus infection the day we arrived. After a horrible fever and 24 hours of worrying i would need to end my trip early, i decided to request assistance from the front desk in making an appointment with the local hospital. After not being avle to get a taxi the Vice Manager of the hotel drove me in his personal vehicle and waited 45 minutes when the Dr came out. Amazing service. The hotel was also very clean and food was always incredible. "
Shaun 3-night trip
Posted 1 month ago
Yakushima Iwasaki Hotel
sankara hotel & spa Yakushima

sankara hotel & spa Yakushima

10/10 Excellent
"An amazing service, reception are super helpful, rooms are luxurious, modern and ultimately clean. Great poo, great spa, dinner at the Michelin restaurant was fantastic. "
eran 2-night trip
Posted 8 months ago
sankara hotel & spa Yakushima

More cheap stays in Yakushima

Yakushima Guesthouse Suginoko

Yakushima Guesthouse Suginoko

825-23 Anbo Yakushima
The price is ฿1,712 per night from 6 Jan to 7 Jan
฿1,712
฿1,883 total
6 Jan - 7 Jan 2026
9.2/10 Wonderful! (46 reviews)

Frequently asked questions

What's the best place to stay in Yakushima?
Sankara hotel & spa Yakushima is a favourite with Expedia customers. This hotel offers a full-service spa and 2 restaurants. Reviews from our site also recommend Cottage Morinokokage and Yakushima Guesthouse Suginoko as top choices for your stay. See all available top hotels, or vacation rentals in Yakushima.
What are some of the best holiday rentals that Yakushima has to offer?
Yakusugi House: This highly rated holiday home rental in Yakushima is located in a national park, and has a fireplace, a private garden and air conditioning to put you at ease in your new surroundings. Kitchen amenities include a fridge, a stovetop and a microwave. You and your friends and family can relax into your holiday with amenities such as a selection of games. Other favourite homes for rent in Yakushima are Yakushima House TABUGAWA and Cottage Views. See all vacation rentals in Yakushima.
If I need to cancel my hotel reservation in Yakushima, will I receive a refund?
Yes! You'll find that most hotel room reservations are fully refundable provided that you cancel before the accommodation's cancellation deadline, which often is within 24-48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of your booking. Filter your search by fully refundable to find flexible hotel deals in Yakushima.
What's the best budget-friendly accommodation in Yakushima?
Based on our traveller reviews, Sudomari Minshuku Friend - Hostel is a top choice for a less expensive stay. Other choices to stay on the cheap include Minshuku Maetakeso - Hostel and Tomarigi - Hostel. View all budget hotels in Yakushima.
What is the top LGBTQ-friendly accommodation in Yakushima?
Samana hotel Yakushima is a top LGBTQ-friendly hotel that features free Wi-Fi and free parking. Cottage HANA MANA is another good choice for your stay. See all available hotels listed as LGBTQ-friendly in Yakushima.
What's the best accommodation option for a beach holiday in Yakushima?
Marine Blue Yakushima is a top beachfront hotel offering free WiFi and free parking, located within a short 1-minute walk of Nagata Inakahama . See more stays near the beach in Yakushima.
What's the best high-end place to stay in Yakushima?
Sankara hotel & spa Yakushima is a luxury hotel with 2 restaurants and a full-service spa, and it's a popular choice for Expedia travellers looking for an elegant place to stay. Find more luxury hotels in Yakushima.
What are some accommodation options with pools in Yakushima?
Sankara hotel & spa Yakushima: Offers 2 restaurants, an outdoor pool and a full-service spa. View all hotels with pools in Yakushima.
What is the best spa hotel in Yakushima?
Sankara hotel & spa Yakushima is a highly recommended luxury spa hotel featuring a 24-hour fitness centre and an outdoor pool. Treat yourself to a facial, Thai massage or body treatment at the on-site spa. See all spa hotels in Yakushima.
What is staying in Yakushima like?
Visitors can enjoy all that Yakushima has to offer, including the seaside, forests and ecotours. In Yakushima, there are 49 hotels and other accommodation options to choose from. Find out more about Yakushima.
What should I see while I'm in Yakushima?
Cultural venues include Yakusugi Nature Museum and Yakushima Sea Turtle Hall. Landmarks like Jomonsugi, Yaku Shrine and Wilson Stump might be worth a visit. Natural beauty is on display at Mount Miyanoura, Yakushima National Park and Nagata Inakahama. Take a look at what more there is to see and do in Expedia's Yakushima guide.
What's the seasonal weather in Yakushima?
The hottest months are usually August and July, with an average temperature of 27°C, while the coldest months are January and February, with an average of 15°C. The rainiest months in Yakushima are June, September, May and July, with each month seeing an average of 364 mm of rainfall.

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