Find hotels in Southeast Minnesota, MN from ฿2,303
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4 Sep - 6 SepOur top choices for Southeast Minnesota hotels
1. Comfort Inn & Suites Rochester South Mayo Clinic
Comfort Inn & Suites Rochester South Mayo ClinicRochester
Deborah
฿2,642
฿3,041 total
includes taxes & fees
28 Aug - 29 Aug
2. Hyatt House Rochester/Mayo Clinic Area
Hyatt House Rochester/Mayo Clinic AreaDowntown Rochester
Bridgett
฿4,559
฿5,248 total
includes taxes & fees
28 Aug - 29 Aug
3. Holiday Inn Express Rochester South - Mayo Area by IHG
Holiday Inn Express Rochester South - Mayo Area by IHGRochester
Stephanie
฿3,181
฿3,663 total
includes taxes & fees
30 Aug - 31 Aug
4. Hampton Inn Rochester-South
Hampton Inn Rochester-SouthRochester
Lynne
฿3,458
฿3,981 total
includes taxes & fees
10 Sept - 11 Sept
5. Home2 Suites by Hilton Rochester Mayo Clinic Area
Home2 Suites by Hilton Rochester Mayo Clinic AreaRochester
Vickie
฿3,994
฿4,598 total
includes taxes & fees
4 Sept - 5 Sept
6. Residence Inn by Marriott Rochester Mayo Clinic Area South
Residence Inn by Marriott Rochester Mayo Clinic Area SouthRochester
Richard
฿4,478
฿5,156 total
includes taxes & fees
4 Sept - 5 Sept
7. Spark by Hilton Rochester South
Spark by Hilton Rochester SouthRochester
Helena
฿2,520
฿2,901 total
includes taxes & fees
5 Sept - 6 Sept
8. Best Western Rochester Hotel Mayo Clinic Area/St. Mary's
Best Western Rochester Hotel Mayo Clinic Area/St. Mary'sRochester
Margita
฿3,236
฿3,726 total
includes taxes & fees
30 Aug - 31 Aug
9. GrandStay Residential Suites Hotel
GrandStay Residential Suites HotelFaribault
S.
฿4,217
฿4,654 total
includes taxes & fees
28 Aug - 29 Aug
10. Staybridge Suites Rochester - Commerce Dr NW by IHG
Staybridge Suites Rochester - Commerce Dr NW by IHGRochester
Brittney
฿4,151
฿4,779 total
includes taxes & fees
5 Sept - 6 Sept
11. Coratel Inn & Suites by Jasper Owatonna
Coratel Inn & Suites by Jasper OwatonnaOwatonna
Carla
฿2,615
฿2,886 total
includes taxes & fees
31 Aug - 1 Sept
12. Kahler Inn and Suites - Mayo Clinic Area
Kahler Inn and Suites - Mayo Clinic AreaDowntown Rochester
Valarie
฿4,089
฿4,708 total
includes taxes & fees
30 Aug - 31 Aug
13. TownePlace Suites by Marriott Rochester Mayo Clinic Area
TownePlace Suites by Marriott Rochester Mayo Clinic AreaKutzky Park
Jorge
฿4,151
฿4,779 total
includes taxes & fees
4 Sept - 5 Sept
14. Hampton Inn & Suites Rochester-North
Hampton Inn & Suites Rochester-NorthRochester
Albert
฿3,190
฿3,672 total
includes taxes & fees
3 Sept - 4 Sept
15. Aspen Suites
Aspen SuitesRochester
CASEY
฿4,650
฿5,621 total
includes taxes & fees
28 Aug - 29 Aug
16. Hilton Rochester Mayo Clinic Area
Hilton Rochester Mayo Clinic AreaDowntown Rochester
Jennifer
฿5,621
฿6,471 total
includes taxes & fees
4 Sept - 5 Sept
17. Baymont by Wyndham Owatonna
Baymont by Wyndham OwatonnaOwatonna
Cody
฿3,207
฿3,539 total
includes taxes & fees
30 Aug - 31 Aug
18. Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area
Centerstone Plaza Hotel Soldiers Field - Mayo Clinic AreaHistoric Southwest
Sarah
฿3,733
฿4,298 total
includes taxes & fees
30 Aug - 31 Aug
19. La Quinta Inn & Suites by Wyndham Rochester Mayo Clinic S
La Quinta Inn & Suites by Wyndham Rochester Mayo Clinic SRochester
Jason
฿2,473
฿2,847 total
includes taxes & fees
30 Aug - 31 Aug
20. Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys
Fairfield Inn & Suites Rochester Mayo Clinic Area/St. MarysKutzky Park
Jon
฿3,648
฿4,200 total
includes taxes & fees
19 Sept - 20 Sept
Stay near popular Southeast Minnesota attractions
Photo by T. Jen
Forestville Mystery Cave State Park
9.0/10 (22 reviews)
Commune with nature and explore the great outdoors at Forestville Mystery Cave State Park during your travels in Preston. Wander the parks or discover the area's countryside.
Photo by Linda Strub
Niagara Cave
9.2/10 (23 reviews)
Commune with nature and explore the great outdoors at Niagara Cave during your travels in Harmony. Amble within the natural setting or visit the churches in this family-friendly area.
Mayo Civic Center
9.2/10 (818 reviews)
Catch an event at Mayo Civic Center during your trip to Rochester. Attend a sporting event or simply visit the area's shops.
Apache Mall
8.6/10 (1,101 reviews)
During your visit to Rochester, you can find the perfect gifts to bring home at Apache Mall. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Rochester Recreation Center
8.0/10 (205 reviews)
Catch an event at Rochester Recreation Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Olmsted County Fairgrounds
7.8/10 (177 reviews)
Take the family on an outing to Olmsted County Fairgrounds during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Shattuck-St. Mary's School
9.6/10 (69 reviews)
Explore the campus of Shattuck-St. Mary's School during your trip to Faribault. Visit the shops in this family-friendly area or simply enjoy its cafes.
Regional Sports Center
8.0/10 (63 reviews)
Catch an event at Regional Sports Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Learn more about Southeast Minnesota
Discover the family-friendly area of Southeast Minnesota—sports teams, a scenic riverfront and sights from Mayowood Mansion to Apache Mall.
See all hotels in Southeast Minnesota
Top Southeast Minnesota Hotel Reviews
Hampton Inn Rochester-South
10/10 Excellent
"As usual, the staff was great and the room was super. It is our go-to for accommodations when we travel to Rochester."
Med City Inn & Suites - Mayo Clinic Area
10/10 Excellent
"We stayed here 4 nights while visiting family and it was better than expected. Pros: room was clean, did not stink, the a/c worked very well, bed was comfy, had good water pressure in the shower and water actually got hot (and rapidly). . Pool was clean, hot tub was clean (jets worked!) and palm tree water feature in kiddie pool worked. Everything at breakfast was in working order and stocked, and they even had non-dairy creamers (Coffee mate). Located next to walking trail. Easy check in and out. Temperature controlled stairwell! Quiet hallway. Cons: found a used washcloth tangled in the shower curtain our first time using it (removed by housekeeping), tub drained very slowly, and when asked, front desk didn't know how much arcade games actually cost (price posted was 50¢, but first game cost $1, took $3 before could play second game). The only true drawback was the tub and the pros definitely outweighed it. Would definitely stay here again!"
Kahler Inn and Suites - Mayo Clinic Area
8/10 Good
"nothing great"
Staybridge Suites Rochester - Mayo Clinic Area by IHG
10/10 Excellent
"There is free breakfast each morning and free dinner Monday-Wednesday. Nothing fancy. Not safe for those with Celiac though. The gym is excellent. The courtyard is comfortable. The staff lights fire pits outside in the evening."
Express Suites Riverport Inn & Suites
10/10 Excellent
"Room was clean, staff was friendly"
Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area
10/10 Excellent
"We loved our stay! Staff was excellent, we will be back"
St James Hotel, a Historic Hotel of America
8/10 Good
"It was an ok hotel ..it should mention the train that comes through in middle of night 😬 it did have a beautiful view of the river..bed was comfortable..overall I would just say it was ok a little spendy and sadly no ghost sightings 😮 I guess I can say I’ve stayed there but probably won’t again"
La Quinta Inn & Suites by Wyndham Rochester Mayo Clinic S
10/10 Excellent
"I loved staying here. It was clean and the staff was helpful and friendly. Free breakfast, parking and shuttle were great! I will definitely stay here again."
Hotel Indigo Rochester – Mayo Clinic Area by IHG
10/10 Excellent
"This is my first time staying at Hotel Indigo. The staff was amazing. I had to keep adding nights and they were so accommodating. The room was just right. It was clean , well stocked and easy access to the Mayo Clinic. I really liked the front desk people. Super friendly and helpful. Love the attached restaurant!"
More cheap stays in Southeast Minnesota
Super 8 by Wyndham Winona MN
1025 Sugar Loaf Rd Winona MN
฿2,027
฿2,303 total
14 Sept - 15 Sept
includes taxes & fees
7.6/10 Good! (1,023 reviews)
Days Inn by Wyndham Austin
700 16th Ave Nw Austin MN
฿2,501
฿2,773 total
3 Sept - 4 Sept
includes taxes & fees
Med City Inn & Suites - Mayo Clinic Area
435 16th Ave Nw Rochester MN
฿2,471
฿2,845 total
30 Aug - 31 Aug
includes taxes & fees
8/10 Very good! (1,018 reviews)
Best Western Rochester Hotel Mayo Clinic Area/St. Mary's
1517 16th St Sw Rochester MN
฿3,236
฿3,726 total
30 Aug - 31 Aug
includes taxes & fees
Hampton Inn Rochester-South
1755 S Broadway Rochester MN
฿3,458
฿3,981 total
10 Sept - 11 Sept
includes taxes & fees
9/10 Wonderful! (1,002 reviews)
Brentwood Inn & Suites
123 Fourth Ave. NW Rochester MN
฿4,086
฿4,704 total
29 Aug - 30 Aug
includes taxes & fees
8.8/10 Excellent! (1,001 reviews)
