A lakeside lodge with a wooden pier, surrounded by lush greenery and a forested backdrop.

Search Boutique Hotels in San Juan Island

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on San Juan Island Boutique Hotels

Tonight
18 Oct - 19 Oct
Tomorrow
19 Oct - 20 Oct
Next weekend
23 Oct - 25 Oct
In two weeks
30 Oct - 1 Nov
No exact matches found, but these alternatives could be just right

Recommended hotels in San Juan Island

A building with a covered outdoor area, red doors, and hanging flower baskets.
A hotel room with two beds, a nightstand with a lamp, a vase with flowers, and a window with curtains.
A two-story building with a balcony, surrounded by a well-maintained garden with various plants and flowers.
A hotel room with a grey armchair, a small round table, a bedside table, a lamp, and a potted plant.

1. Discovery Inn

Discovery Inn
Friday Harbor
United States
Robert
฿5,685
฿6,291 total
includes taxes & fees
19 Oct - 20 Oct
Discovery Inn
A motel with a row of rooms, a parking lot, and blooming flowers in the foreground.
A room with two beds, wooden walls, and a window.
A bathroom with a shower, a towel rack, and a shelf with a towel.
A wooden chair and a wooden dresser in a room with a wooden panel wall.

2. The Orca Inn

The Orca Inn
Friday Harbor
United States
Andrew
฿3,249
฿3,594 total
includes taxes & fees
19 Oct - 20 Oct
The Orca Inn
A wooden cabin interior with a dining table, chairs, and a bench.
A cozy cabin interior with a large window overlooking a lake, a fireplace, and a comfortable seating area.
A marina with boats docked, surrounded by forested hills and a small building complex.
A wooden deck with a table and chairs overlooking a marina with boats and a forested hillside.

3. Snug Harbor Resort

Snug Harbor Resort
Friday Harbor
United States
Amy
฿7,654
฿8,447 total
includes taxes & fees
1 Nov - 2 Nov
Snug Harbor Resort
A marina with boats docked in a structured layout, surrounded by water and a distant cityscape.
A serene lakeside setting with string lights, wicker chairs, and a fire pit area.
A hotel with a large building, a pond in front, and trees around.
A waterfront hotel with multiple docked boats, a pier, and a view of the surrounding forested area.

4. Roche Harbor Resort

Roche Harbor Resort
Friday Harbor
United States
Nicco
฿6,498
฿7,529 total
includes taxes & fees
1 Nov - 2 Nov
Roche Harbor Resort
A serene outdoor seating area with a table and chairs, surrounded by lush greenery and a tree.
A grassy area with a pond, trees, and a red chair.
A spacious entryway with a wooden staircase, a patterned rug, and potted plants.
A dining table set with plates of food, glasses, and a vase of flowers.

5. Trumpeter Inn

Trumpeter Inn
Friday Harbor
United States
Thomas
฿7,010
฿7,735 total
includes taxes & fees
20 Oct - 21 Oct
Trumpeter Inn
A living room with a sofa, armchairs, a coffee table, and a fireplace.
A hotel lobby with a reception desk, seating area, and a view of the adjacent room.
A waterfront promenade with benches, a gazebo, and a large white boat docked at a pier.
A building with a sign that reads "OFFICE Gift Shop" at the entrance.

6. Earthbox Inn & Spa

Earthbox Inn & Spa
Friday Harbor
United States
Ann
฿7,353
฿8,136 total
includes taxes & fees
1 Nov - 2 Nov
Earthbox Inn & Spa
A modern interior with sofas, a table, and hanging plants.
A living room with a stone fireplace, a large window, a dark gray sofa, and a wooden coffee table.
A modern interior with a stone fireplace, hanging lamps, and a sign indicating the property is for sale.
A covered outdoor swimming pool area with a hot tub, benches, and emergency exit signs.

7. Friday Harbor Suites

Friday Harbor Suites
Friday Harbor
United States
Greg
฿5,375
฿5,948 total
includes taxes & fees
19 Oct - 20 Oct
Friday Harbor Suites
Two people relaxing by a fire pit with a view of a harbor and a large ship.
A bar area with a large TV screen displaying a landscape, a bookshelf with books and bottles, and leather chairs.
A coastal town at dusk with a marina, boats, and a large cruise ship docked.
A bar area with shelves of bottles and glasses, a counter with a fruit bowl, and tables with chairs.

8. Friday Harbor House

Friday Harbor House
Friday Harbor
United States
Randy
฿10,198
฿11,284 total
includes taxes & fees
1 Nov - 2 Nov
Friday Harbor House
A marina with boats, a cruise ship, and a forested island.
A kitchen with wooden cabinets, a built-in microwave, and a coffee station.
A white building with a balcony, potted plants, and a stone pathway.
A living room with a sectional sofa, a coffee table, a lamp, and a potted plant.

9. Bird Rock Hotel

Bird Rock Hotel
Friday Harbor
United States
Vanessa
฿5,181
฿5,733 total
includes taxes & fees
2 Nov - 3 Nov
Bird Rock Hotel
A two-story building with a covered porch, surrounded by a variety of flowering plants.
A room with a bed, a TV, a table with chairs, a rug, and a balcony with chairs.
A man seated at a piano with sheet music, surrounded by books and a vase of flowers.
A dining room with a large wooden table surrounded by chairs, a patterned rug, and a cabinet with a mirror.

10. Friday Harbor Grand B&B

Friday Harbor Grand B&B
Friday Harbor
United States
Andrew
฿8,002
฿8,854 total
includes taxes & fees
19 Oct - 20 Oct
Friday Harbor Grand B&B
View all properties

Top San Juan Island Hotel Reviews

Explore a world of travel with Expedia