The Best Hotels in South Mission Beach, San Diego - 2026 Updated Prices

A sandy beach with a lifeguard tower, ocean waves, and people in the distance.

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Our top choices for South Mission Beach hotels

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

1. Hampton Inn & Suites San Diego Airport Liberty Station

5.5 km from South Mission Beach

David

฿7,136 total

includes taxes & fees

7 Sept - 8 Sept

A pool area with a hot tub, lounge chairs, and umbrellas.

2. The Dana on Mission Bay

Mission Bay, 1.5 km from South Mission Beach

elizabeth

฿7,082 total

includes taxes & fees

7 Sept - 8 Sept

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

3. Homewood Suites by Hilton San Diego Airport/Liberty Station

5.3 km from South Mission Beach

Orlyn

฿7,610 total

includes taxes & fees

9 Sept - 10 Sept

An outdoor dining area with tables and chairs, overlooking a beach and ocean.

4. Bahia Resort Hotel

Central Mission Beach, 1 km from South Mission Beach

Annmarie

฿8,525 total

includes taxes & fees

4 Oct - 5 Oct

An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.

5. Paradise Point Resort & Spa

Mission Bay, 1.7 km from South Mission Beach

Sandra

฿9,688 total

includes taxes & fees

7 Sept - 8 Sept

A spacious kitchen with a central island, wooden ceiling, and modern lighting fixtures.

6. Holiday Inn Express San Diego - SeaWorld Area by IHG

3.2 km from South Mission Beach

nishant

฿5,150 total

includes taxes & fees

8 Sept - 9 Sept

A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

7. Wyndham Garden San Diego Near SeaWorld

3.7 km from South Mission Beach

Nayla

฿3,451 total

includes taxes & fees

9 Sept - 10 Sept

A hotel with a central courtyard, palm trees, and a fountain.

8. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Old Town San Diego, 5.3 km from South Mission Beach

Edward Palacios

฿4,880 total

includes taxes & fees

27 Sept - 28 Sept

A modern building with multiple windows, outdoor seating, and a chessboard.

9. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

4.6 km from South Mission Beach

Joshua

฿4,974 total

includes taxes & fees

9 Sept - 10 Sept

A balcony with wicker furniture overlooking a marina and a coastal cityscape.

10. Sheraton San Diego Resort

6.7 km from South Mission Beach

Pooja

฿7,477 total

includes taxes & fees

7 Sept - 8 Sept

An outdoor lounge area with seating, a fire feature, and a view of the building's interior.

11. Hampton Inn San Diego/Mission Valley

6.7 km from South Mission Beach

Mohamed

฿4,355 total

includes taxes & fees

10 Sept - 11 Sept

A seaside restaurant with outdoor seating overlooking the ocean, a pier in the background, and a clear sky.

12. Ocean Beach Hotel

Ocean Beach, 1.9 km from South Mission Beach

Diana

฿5,585 total

includes taxes & fees

15 Sept - 16 Sept

An outdoor patio area with tables and chairs, string lights, and a building with balconies.

13. Fairfield Inn & Suites San Diego Old Town

Old Town San Diego, 5.9 km from South Mission Beach

Anthony

฿4,832 total

includes taxes & fees

7 Sept - 8 Sept

A modern architectural entrance with a central archway, illuminated by wall-mounted lights, flanked by planters with cacti, and a pathway leading through the arch.

14. Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Mission Beach, 2 km from South Mission Beach

JOSE

฿9,491 total

includes taxes & fees

15 Sept - 16 Sept

A poolside view with a lounge chair, a towel, a tray with a drink and a coconut, and a pool with palm trees in the background.

15. San Diego Mission Bay Resort

Mission Bay, 4.3 km from South Mission Beach

Maria

฿9,347 total

includes taxes & fees

7 Sept - 8 Sept

A Holiday Inn Express hotel with a clear entrance, a parking lot, and a landscaped area with plants.

16. Holiday Inn Express San Diego Airport - Old Town by IHG

6.6 km from South Mission Beach

Tirthankar

฿5,379 total

includes taxes & fees

23 Sept - 24 Sept

A resort with two-story buildings, balconies, and a pool area.

17. Humphreys Half Moon Inn

5.9 km from South Mission Beach

Laura

฿8,446 total

includes taxes & fees

9 Sept - 10 Sept

A pool area with lounge chairs and a hot tub, overlooking the ocean.

18. The Wayfarer San Diego

Mission Beach, 2.8 km from South Mission Beach

Nicholas

฿9,852 total

includes taxes & fees

22 Sept - 23 Sept

A building with a "Bienvenidos" sign, palm trees, and a well-maintained garden.

19. Old Town Inn

5.1 km from South Mission Beach

Layne

฿5,683 total

includes taxes & fees

7 Sept - 8 Sept

A living room with a large window, a flat-screen TV, and a patterned rug.

20. GreenTree Inn San Diego Mission Bay

Pacific Beach, 5.5 km from South Mission Beach

Alexis

฿4,295 total

includes taxes & fees

7 Sept - 8 Sept

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Where to stay in South Mission Beach

Find the best South Mission Beach areas for the activities you enjoy most.

A plaza with a traditional building, benches, and a large tree.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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A beach with surfers and swimmers during sunset.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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A roller coaster under construction with scaffolding and a ticket booth in the foreground.

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

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Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

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An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Mission and Pacific Beaches are top sights worth seeing.

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Top South Mission Beach Hotel Reviews

Omni San Diego Hotel at the Ballpark

10/10 Excellent

"The hotel was exactly what we needed after having gone to the ball park, fantastic service, fantastic location, couldn't have asked for a better stay"

Manchester Grand Hyatt San Diego

8/10 Good

"Room was excellent, very comfortable and stylish. Ordering for room delivery a little complicated; QR code on menu linked to multiple webpages that were not intuitive nor included breakfast ordering options- tried ordering at dinner too and webpage would not allow order to be placed- ended up calling in order both times. Dismayed main pool area was completely under construction in August, and they started at 8am, so no sleeping in. Other than that, very pleasant stay"

The Dana on Mission Bay

10/10 Excellent

"The Dana is always our “go to” hotel in San Diego. When we bring our dogs, it is even better. This hotel is very dog friendly and that makes such a difference for our trips. Dogs are part of the family and being able to include them is fantastic. The hotel is beautiful, convenient, on the bay, and the staff is wonderful. We will definitely be back soon."

Frequently asked questions

What's it like in South Mission Beach?

Guests are sure to enjoy their time checking out all that San Diego's South Mission Beach neighbourhood has to offer. Experience the best of South Mission Beach with a visit to Mission Beach and Mission Bay during your trip.

How many hotels are there in South Mission Beach?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 314 South Mission Beach hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in South Mission Beach, will I receive a refund?

Yes! Most hotel reservations are fully refundable if you cancel before the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a non-refundable reservation, you may still be able to cancel and receive a refund within a 24-hour period of your booking. Add dates, click "Search", then use the filter option "fully refundable" to get the best options available in South Mission Beach.

What is there to do in this San Diego neighbourhood?

Enjoy a stroll along the shore at Mission Beach, Mission and Pacific Beaches and South Mission Beach while you're in South Mission Beach. You could also plan a visit to Mission Bay or Belmont Park while you're in the neighbourhood. WaveHouse San Diego, Mariner's Point Park and Golf Gardens Miniature Golf are just a few of the places to visit in and around South Mission Beach. While you're out sightseeing in San Diego, make sure that you visit other sights such as Café Bahia or Dog Beach.

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Our top choices for South Mission Beach hotels

1. Hampton Inn & Suites San Diego Airport Liberty Station

2. The Dana on Mission Bay

3. Homewood Suites by Hilton San Diego Airport/Liberty Station

4. Bahia Resort Hotel

5. Paradise Point Resort & Spa

6. Holiday Inn Express San Diego - SeaWorld Area by IHG

7. Wyndham Garden San Diego Near SeaWorld

8. Hilton Garden Inn San Diego Old Town/SeaWorld Area

9. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

10. Sheraton San Diego Resort

11. Hampton Inn San Diego/Mission Valley

12. Ocean Beach Hotel

13. Fairfield Inn & Suites San Diego Old Town

14. Boardwalk Hotel: Bikes, Boards & Beach Gear Included

15. San Diego Mission Bay Resort

16. Holiday Inn Express San Diego Airport - Old Town by IHG

17. Humphreys Half Moon Inn

18. The Wayfarer San Diego

19. Old Town Inn

20. GreenTree Inn San Diego Mission Bay

Where to stay in South Mission Beach

Downtown San Diego

Pacific Beach

Mission Beach

Gaslamp Quarter

Mission Bay

Top South Mission Beach Hotel Reviews

Omni San Diego Hotel at the Ballpark

Frequently asked questions

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