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30 Dec - 31 Dec
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31 Dec - 1 Jan
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2 Jan - 4 Jan
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9 Jan - 11 Jan

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Our top choices for Harbor Island hotels

Room, 1 King Bed with Sofa bed, Marina View | View from room
Sheraton San Diego Resort

Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
Harbor Island
8.4 out of 10, Very good, (3199)
"The stay and staff were wonderful and very helpful.."
United States
Elsie
The price is ฿3,956
฿5,687 total
includes taxes & fees
1 Jan - 2 Jan 2026
Sheraton San Diego Resort
Exterior
Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
Harbor Island
8.8 out of 10, Excellent, (1225)
"Clean and spacious rooms, wonderful bar on the bay, great place to see Christmas boat parade, friendly staff."
United States
Jessica or Ian
The price is ฿5,064
฿5,821 total
includes taxes & fees
5 Jan - 6 Jan 2026
Hilton San Diego Airport/Harbor Island
Terrace/patio
Wyndham San Diego Bayside

Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
3.3 km from Harbor Island
8.4 out of 10, Very good, (6044)
"Always an amazing stay"
United States
Jana
The price is ฿4,008
฿5,565 total
includes taxes & fees
4 Jan - 5 Jan 2026
Wyndham San Diego Bayside
Exterior
Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 5.5 km from Harbor Island
8.4 out of 10, Very good, (1587)
"Totally Recommend! Rooms are really clean and comfortable, the staff are great as well. "
United States
Fernando
The price is ฿4,159
฿6,422 total
includes taxes & fees
10 Jan - 11 Jan 2026
Hyatt Regency Mission Bay Spa and Marina
Deluxe Room, 2 Queen Beds | Hypo-allergenic bedding, in-room safe, desk, iron/ironing board
Manchester Grand Hyatt San Diego

Manchester Grand Hyatt San Diego

Manchester Grand Hyatt San Diego
4.0 star property
Marina District, 3.9 km from Harbor Island
9.0 out of 10, Wonderful, (2890)
"Lovely hotel with friendly staff."
United States
Lynnea
The price is ฿5,570
฿8,183 total
includes taxes & fees
1 Jan - 2 Jan 2026
Manchester Grand Hyatt San Diego
Standard Room, 1 King Bed, Non Smoking, Bay View | Premium bedding, pillow-top beds, in-room safe, desk
The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection
3.0 star property
4 km from Harbor Island
8.8 out of 10, Excellent, (826)
"would stay again and recommend "
United States
Brendi
The price is ฿3,497
฿4,055 total
includes taxes & fees
4 Jan - 5 Jan 2026
The DEXTRO Little Italy, BW Premier Collection
Premium bedding, pillow-top beds, desk, laptop workspace
Staypineapple, Hotel Z, Gaslamp San Diego

Staypineapple, Hotel Z, Gaslamp San Diego

Staypineapple, Hotel Z, Gaslamp San Diego
3.0 star property
Gaslamp Quarter, 4.7 km from Harbor Island
9.4 out of 10, Exceptional, (1007)
"Great location "
United States
Mohammad
The price is ฿3,133
฿4,547 total
includes taxes & fees
6 Jan - 7 Jan 2026
Staypineapple, Hotel Z, Gaslamp San Diego
Daily buffet breakfast for a fee
DoubleTree by Hilton Hotel San Diego - Mission Valley

DoubleTree by Hilton Hotel San Diego - Mission Valley

DoubleTree by Hilton Hotel San Diego - Mission Valley
4.0 star property
6.6 km from Harbor Island
8.4 out of 10, Very good, (1440)
"The room was super quiet and clean. The staff was kind at check in and check out. We would definitely stay here again. "
United States
Janelle
The price is ฿3,556
฿4,087 total
includes taxes & fees
3 Jan - 4 Jan 2026
DoubleTree by Hilton Hotel San Diego - Mission Valley
Outdoor pool, open 7:00 AM to 10:00 PM, pool cabanas (surcharge)
San Diego Mission Bay Resort

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 6 km from Harbor Island
8.4 out of 10, Very good, (1318)
"Room was super clean and updated, location up against the bay was perfect. We really enjoyed our stay and want to come back soon!"
United States
Haley
The price is ฿4,258
฿6,535 total
includes taxes & fees
12 Jan - 13 Jan 2026
San Diego Mission Bay Resort
Exterior
Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 2.9 km from Harbor Island
8.2 out of 10, Very good, (1927)
"Great stay "
United States
Vanessa
The price is ฿2,646
฿3,041 total
includes taxes & fees
5 Jan - 6 Jan 2026
Comfort Inn San Diego Old Town
Outdoor pool, pool loungers
Hilton San Diego Bayfront

Hilton San Diego Bayfront

Hilton San Diego Bayfront
4.0 star property
Marina District, 5 km from Harbor Island
8.6 out of 10, Excellent, (1903)
"Enjoyed my stay"
United States
Brandon
The price is ฿3,855
฿6,022 total
includes taxes & fees
4 Jan - 5 Jan 2026
Hilton San Diego Bayfront
Lobby
Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
3.3 km from Harbor Island
7.4 out of 10, Good, (4124)
"Get location to the airport, safe, great staff, & overall wonderful stay"
United States
Tyler
The price is ฿2,624
฿3,016 total
includes taxes & fees
12 Jan - 13 Jan 2026
Wyndham Garden San Diego Near SeaWorld
Outdoor pool, pool umbrellas, pool loungers
Hampton Inn San Diego-Downtown

Hampton Inn San Diego-Downtown

Hampton Inn San Diego-Downtown
2.5 star property
3.3 km from Harbor Island
8.2 out of 10, Very good, (2318)
"Nice and convenient place to stay!"
United States
Esperanza
The price is ฿3,103
฿3,598 total
includes taxes & fees
18 Jan - 19 Jan 2026
Hampton Inn San Diego-Downtown
Exterior
Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter
3.0 star property
Gaslamp Quarter, 4.8 km from Harbor Island
9.0 out of 10, Wonderful, (1244)
"Clean, courteous staff, good location. "
United States
Carla
The price is ฿4,339
฿5,030 total
includes taxes & fees
2 Jan - 3 Jan 2026
Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter
Lobby
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
2.5 star property
Pacific Beach, 8.5 km from Harbor Island
9.0 out of 10, Wonderful, (813)
"Good location, good basic breakfast, good parking, recommended. "
United States
Leyla
The price is ฿3,197
฿3,674 total
includes taxes & fees
8 Jan - 9 Jan 2026
Fairfield Inn & Suites by Marriott San Diego Pacific Beach
Exterior
Bay Club Hotel & Marina

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
2 km from Harbor Island
9.2 out of 10, Wonderful, (3234)
"Great stay and location!"
United States
Jason
The price is ฿3,324
฿3,821 total
includes taxes & fees
5 Jan - 6 Jan 2026
Bay Club Hotel & Marina
Outdoor pool
Hard Rock Hotel San Diego

Hard Rock Hotel San Diego

Hard Rock Hotel San Diego
4.0 star property
Gaslamp Quarter, 4.8 km from Harbor Island
9.0 out of 10, Wonderful, (3179)
"Beautiful hotel"
United States
Jordan M.
The price is ฿14,214
฿17,918 total
includes taxes & fees
31 Dec - 1 Jan 2026
Hard Rock Hotel San Diego
2 outdoor pools, open 6 AM to 10:00 PM, pool cabanas (surcharge)
Marriott Marquis San Diego Marina

Marriott Marquis San Diego Marina

Marriott Marquis San Diego Marina
4.0 star property
Marina District, 4.2 km from Harbor Island
9.2 out of 10, Wonderful, (1966)
"Great place to stay, everything close by"
United States
Manjinder
The price is ฿5,792
฿8,378 total
includes taxes & fees
9 Jan - 10 Jan 2026
Marriott Marquis San Diego Marina
Courtyard
DoubleTree by Hilton San Diego - Del Mar

DoubleTree by Hilton San Diego - Del Mar

DoubleTree by Hilton San Diego - Del Mar
4.0 star property
Carmel Valley, 23.6 km from Harbor Island
8.4 out of 10, Very good, (1932)
"Nice hotel"
United States
Xiaoyang
The price is ฿3,545
฿4,039 total
includes taxes & fees
25 Jan - 26 Jan 2026
DoubleTree by Hilton San Diego - Del Mar
Outdoor pool, a heated pool
Days Inn by Wyndham San Diego Hotel Circle

Days Inn by Wyndham San Diego Hotel Circle

Days Inn by Wyndham San Diego Hotel Circle
3.0 star property
5.4 km from Harbor Island
8.0 out of 10, Very good, (2440)
"Clean room and excellent service "
United States
Jaime
The price is ฿2,612
฿3,002 total
includes taxes & fees
5 Jan - 6 Jan 2026
Days Inn by Wyndham San Diego Hotel Circle
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Where to stay in Harbor Island

Find the best Harbor Island areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Gaslamp Quarter featuring a bar, night scenes and street scenes

Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

Pacific Beach Park showing a beach

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Belmont Park featuring a park and rides

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Dog Beach and Sunset Cliffs Natural Park.

Top Harbor Island Hotel Reviews

Pendry San Diego

Pendry San Diego

10/10 Excellent
"The front desk manager was a pleasure to deal with. We are Elwood Members at the Pendry in Newport and we were do impressed with how we were treated, the staff and the beautiful room we stayed in. Highly recommend to stay at this property. If you want 5 star service, you will get it at this Pendry!"
Darin 1-night trip
Posted 3 days ago
Pendry San Diego

Frequently asked questions

What's it like in Harbor Island?
Harbor Island is a scenic neighbourhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.
Where is the best place to stay in Harbor Island?
Based on Expedia customer reviews, Hilton San Diego Airport/Harbor Island is the highest ranked property in Harbor Island. This hotel is a short 5-minute walk from Naval Base Coronado, and it offers a restaurant and an outdoor pool. Another top choice in the area is Sheraton San Diego Resort.
How many hotels should I expect to find in the Harbor Island area?
Book one of Expedia's 6 hotels and other accommodation options in Harbor Island and start exploring everything San Diego has to offer.
If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?
Yes, the majority of hotel reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and get a refund within 24 hours of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to view the top deals on offer in Harbor Island.
What is there to do around this San Diego neighbourhood?
San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, make sure that you visit other sights such as Port of San Diego or Hotel Circle.