Search Hotels in Mission Bay, San Diego

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Our top choices for Mission Bay hotels

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,379 reviews)
"Phenomenal place to stay. The amenities are top tier, the staff is kind, the resort is so clean. I will be a forever returning guest. "
United States
samantha
The price is ฿4,452
฿6,759 total
includes taxes & fees
22 Feb - 23 Feb
Paradise Point Resort & Spa

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,590 reviews)
"Staff was extremely friendly and helpful.. from the valet to front desk and restaurant staff. Rooms were comfortable, spacious and clean. It was a great stay and conveniently close to SeaWorld. "
United States
Brandon
The price is ฿4,665
฿7,018 total
includes taxes & fees
25 Jan - 26 Jan
Hyatt Regency Mission Bay Spa and Marina

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,021 reviews)
"Great location, friendly attentive staff and great tv setup in rooms."
United States
John
The price is ฿4,933
฿6,383 total
includes taxes & fees
22 Feb - 23 Feb
The Dana on Mission Bay

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,338 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is ฿5,714
฿8,208 total
includes taxes & fees
22 Feb - 23 Feb
San Diego Mission Bay Resort

The Bristol Hotel San Diego

The Bristol Hotel San Diego
3.5 star property
8.7 km from Mission Bay
8.6 out of 10, Excellent, (1,473 reviews)
"Newly remodeled rooms, clean and wonderful staff. "
United States
Zoe
The Bristol Hotel San Diego

Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
8 km from Mission Bay
8.4 out of 10, Very good, (5,998 reviews)
"Great place to stay"
United States
David
The price is ฿4,720
฿6,553 total
includes taxes & fees
15 Feb - 16 Feb
Wyndham San Diego Bayside

Westgate Hotel

Westgate Hotel
4.5 star property
8.7 km from Mission Bay
9.0 out of 10, Wonderful, (1,003 reviews)
"Great stay"
United States
ESMERALDA
Westgate Hotel

Hard Rock Hotel San Diego

Hard Rock Hotel San Diego
4.0 star property
Gaslamp Quarter, 9.7 km from Mission Bay
9.0 out of 10, Wonderful, (3,254 reviews)
"Great place to stay!"
United States
CINDY
The price is ฿14,631
฿18,444 total
includes taxes & fees
3 Feb - 4 Feb
Hard Rock Hotel San Diego

Palihotel San Diego Gaslamp Quarter

Palihotel San Diego Gaslamp Quarter
4.0 star property
Gaslamp Quarter, 9.1 km from Mission Bay
8.6 out of 10, Excellent, (2,192 reviews)
"Excellent location, wonderful staff."
United States
phuc
The price is ฿3,913
฿4,537 total
includes taxes & fees
25 Jan - 26 Jan
Palihotel San Diego Gaslamp Quarter

DoubleTree by Hilton Hotel San Diego - Mission Valley

DoubleTree by Hilton Hotel San Diego - Mission Valley
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very good, (1,492 reviews)
"Staff, rooms, pools, and price..very good! "
United States
James
The price is ฿4,172
฿4,796 total
includes taxes & fees
30 Jan - 31 Jan
DoubleTree by Hilton Hotel San Diego - Mission Valley

The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection
3.0 star property
8.2 km from Mission Bay
9.0 out of 10, Wonderful, (942 reviews)
"Great stay. Would definitely stay again."
United States
Zoraima
The price is ฿3,630
฿4,209 total
includes taxes & fees
22 Feb - 23 Feb
The DEXTRO Little Italy, BW Premier Collection

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3.4 km from Mission Bay
9.4 out of 10, Exceptional, (1,721 reviews)
"Great location. Easy access to beach and boardwalk."
United States
Fernando
The price is ฿5,025
฿5,776 total
includes taxes & fees
25 Jan - 26 Jan
The Wayfarer San Diego

The Sofia Hotel

The Sofia Hotel
3.5 star property
8.7 km from Mission Bay
8.6 out of 10, Excellent, (1,706 reviews)
"Clean rooms, and very nice staff"
United States
Guadalupe
The Sofia Hotel

Staypineapple, Hotel Z, Gaslamp San Diego

Staypineapple, Hotel Z, Gaslamp San Diego
3.0 star property
Gaslamp Quarter, 9.4 km from Mission Bay
9.4 out of 10, Exceptional, (1,002 reviews)
"Great location and stay. "
United States
Simran
The price is ฿3,099
฿4,498 total
includes taxes & fees
26 Jan - 27 Jan
Staypineapple, Hotel Z, Gaslamp San Diego

Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter
3.0 star property
Gaslamp Quarter, 9.6 km from Mission Bay
9.0 out of 10, Wonderful, (1,257 reviews)
"Friendly staff, great location, excellent value overall "
United States
Maryann
The price is ฿4,939
฿5,727 total
includes taxes & fees
24 Jan - 25 Jan
Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
6.5 km from Mission Bay
9.2 out of 10, Wonderful, (2,743 reviews)
"Great stay, highly recommend."
United States
Ryan
The price is ฿5,291
฿6,708 total
includes taxes & fees
25 Jan - 26 Jan
Humphreys Half Moon Inn

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2.3 km from Mission Bay
8.6 out of 10, Excellent, (1,854 reviews)
"Beautiful property and excellent amenities. "
United States
Phillip
The price is ฿4,720
฿7,152 total
includes taxes & fees
1 Feb - 2 Feb
Bahia Resort Hotel

Hampton Inn San Diego/Mission Valley

Hampton Inn San Diego/Mission Valley
2.5 star property
4.3 km from Mission Bay
8.6 out of 10, Excellent, (1,383 reviews)
"Great breakfast-comfortable rooms-helpful staff-great location for events"
United States
bill
The price is ฿3,809
฿4,378 total
includes taxes & fees
25 Jan - 26 Jan
Hampton Inn San Diego/Mission Valley

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,916 reviews)
"The staff was very nice and great location"
United States
Curtis
The price is ฿2,403
฿2,762 total
includes taxes & fees
27 Jan - 28 Jan
GreenTree Inn San Diego Mission Bay

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
7 km from Mission Bay
8.8 out of 10, Excellent, (1,568 reviews)
"Great place.very clean great for family would definitely stay there again."
United States
Joseph
The price is ฿4,458
฿5,124 total
includes taxes & fees
16 Feb - 17 Feb
Best Western Plus Island Palms Hotel & Marina
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Dog Beach and Ocean Beach Farmers Market.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
What's a favourite hotel to stay in Mission Bay?
Based on Expedia customer reviews, Paradise Point Resort & Spa is the highest ranked property in Mission Bay. This resort offers a marina and 5 outdoor pools. Other favourite options in the area include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or Mission Bay Golf Course while you're in the neighbourhood. Mission Beach, North Cove Beach and Bahia Point Beach are just a few of the places to visit in and around Mission Bay. When you're sightseeing in San Diego, Bay City Brewing Co. and Sail Bay are also worth a stop.