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Our top choices for Mission Bay hotels

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,069 reviews)
"Great location and grounds!"
United States
Ethan
The price is ฿5,170
฿6,668 total
includes taxes & fees
22 Feb - 23 Feb
The Dana on Mission Bay

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,402 reviews)
"Clean rooms, friendly staff, and a beautiful view all around.. "
United States
Morgan
The price is ฿4,524
฿6,869 total
includes taxes & fees
1 Mar - 2 Mar
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,733 reviews)
"rooms were very nice staff was helpful location was excellent"
United States
Michele
The price is ฿6,154
฿7,074 total
includes taxes & fees
9 Feb - 10 Feb
The Wayfarer San Diego

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.2 out of 10, Wonderful, (290 reviews)
"Helpful staff, amazing location, adorable hotel. Loved it. "
United States
Kimberly
The price is ฿4,826
฿5,442 total
includes taxes & fees
10 Feb - 11 Feb
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (608 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is ฿4,261
฿4,898 total
includes taxes & fees
16 Feb - 17 Feb
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,005 reviews)
"Good location with friendly staff"
United States
Frank
The price is ฿4,414
฿5,073 total
includes taxes & fees
10 Feb - 11 Feb
The Beach Cottages

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,342 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is ฿6,274
฿8,879 total
includes taxes & fees
16 Feb - 17 Feb
San Diego Mission Bay Resort

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,003 reviews)
"very spacious room very clean close to everything restaurant stores Central located."
United States
Walter
The price is ฿4,004
฿4,602 total
includes taxes & fees
23 Feb - 24 Feb
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,869 reviews)
"Amazing place "
United States
Richard
The price is ฿4,797
฿7,268 total
includes taxes & fees
1 Mar - 2 Mar
Bahia Resort Hotel

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
2.5 star property
Pacific Beach, 2.9 km from Mission Bay
9.0 out of 10, Wonderful, (851 reviews)
"Excellent hotel and really nice breakfast"
United States
Luke
The price is ฿4,130
฿4,747 total
includes taxes & fees
16 Feb - 17 Feb
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,598 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is ฿5,013
฿7,430 total
includes taxes & fees
26 Feb - 27 Feb
Hyatt Regency Mission Bay Spa and Marina

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.4 out of 10, Very good, (261 reviews)
"Clean hotel & great location. "
United States
yardley
The price is ฿2,787
฿3,204 total
includes taxes & fees
15 Feb - 16 Feb
Best Western San Diego Pacific Beach/Mission Bay

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,340 reviews)
"Nice beds and breakfast, really convenient "
Canada
Margarita
The price is ฿2,948
฿3,388 total
includes taxes & fees
22 Feb - 23 Feb
Comfort Inn Sea World Area

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,927 reviews)
"The staff was very nice and great location"
United States
Curtis
The price is ฿2,911
฿3,346 total
includes taxes & fees
16 Feb - 17 Feb
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,198 reviews)
"Room was clean, staff was great, great location, will definitely stay there again.."
United States
Kimberly
The price is ฿5,297
฿5,982 total
includes taxes & fees
9 Feb - 10 Feb
Surfer Beach Hotel

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,145 reviews)
"Great location! Wonderful staff, clean facilities, lots to do."
United States
Elizabeth
The price is ฿5,601
฿8,120 total
includes taxes & fees
22 Feb - 23 Feb
Catamaran Resort and Spa

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,525 reviews)
"Room was nice, clean, staff was friendly, "
United States
philip
The price is ฿2,845
฿3,213 total
includes taxes & fees
9 Feb - 10 Feb
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (255 reviews)
"Ocean view couldnt be better Why i picked this Not normally a hostel woman"
United States
Vickie
The price is ฿3,711
฿4,185 total
includes taxes & fees
22 Feb - 23 Feb
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,238 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is ฿1,986
฿2,283 total
includes taxes & fees
11 Mar - 12 Mar
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,171 reviews)
"Good location friendly staff"
United States
Anya
The price is ฿2,806
฿3,225 total
includes taxes & fees
9 Feb - 10 Feb
Wyndham Garden San Diego Near SeaWorld
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,069 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,402 reviews
View
View from property
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,733 reviews
View
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.2
Wonderful
290 reviews
View
Reception
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
9.2
Wonderful
608 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 45 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 45 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.