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Our top choices for Mission Bay hotels

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (312 reviews)
"Excellent location, great and helpful staff and super cute room! We'd stay here again for sure!"
United States
Charissa
The price is ฿8,064
฿9,092 total
includes taxes & fees
23 Mar - 24 Mar
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,747 reviews)
"Rooms were clean, pool was great, right next to the beach, will definitely stay again!"
United States
Emma
The price is ฿9,173
฿10,544 total
includes taxes & fees
12 Apr - 13 Apr
The Wayfarer San Diego

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,141 reviews)
"clean room, great location, friendly staff, beautiful grounds"
United States
Rebecca
The price is ฿5,398
฿6,939 total
includes taxes & fees
5 Apr - 6 Apr
The Dana on Mission Bay

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (718 reviews)
"Breakfast area was very nice"
United States
Heidi
The price is ฿5,205
฿5,983 total
includes taxes & fees
24 Mar - 25 Mar
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,002 reviews)
"Good location with friendly staff"
United States
Frank
The price is ฿5,582
฿6,416 total
includes taxes & fees
5 Apr - 6 Apr
The Beach Cottages

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.6 out of 10, Excellent, (2,446 reviews)
"Clean rooms and well maintained resort."
United States
Derek
The price is ฿6,342
฿8,980 total
includes taxes & fees
5 Apr - 6 Apr
Paradise Point Resort & Spa

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,001 reviews)
"My friend and I enjoyed our stay. The beds were very comfy and the room was nice and clean. Also I have to say the breakfast was really good! "
United States
Brooke
The price is ฿5,621
฿6,462 total
includes taxes & fees
12 Apr - 13 Apr
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,907 reviews)
"Wonderful property, great staff, easy access to the area, such a beautiful stay"
United States
David
The price is ฿5,340
฿7,914 total
includes taxes & fees
12 Apr - 13 Apr
Bahia Resort Hotel

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (863 reviews)
"Excellent hotel and really nice breakfast"
United States
Luke
The price is ฿4,152
฿4,773 total
includes taxes & fees
5 Apr - 6 Apr
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,366 reviews)
"Clean room, excellent friendly staff, comfortable beds"
Canada
Shauna
The price is ฿7,634
฿10,464 total
includes taxes & fees
5 Apr - 6 Apr
San Diego Mission Bay Resort

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,616 reviews)
"Great ocean view!"
United States
Louis
The price is ฿5,781
฿8,335 total
includes taxes & fees
5 Apr - 6 Apr
Hyatt Regency Mission Bay Spa and Marina

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,470 reviews)
"It was very clean and comfortable would stay again "
United States
Amparo
The price is ฿3,258
฿3,745 total
includes taxes & fees
5 Apr - 6 Apr
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (295 reviews)
"Clean hotel & great location. "
United States
yardley
The price is ฿3,858
฿4,435 total
includes taxes & fees
5 Apr - 6 Apr
Best Western San Diego Pacific Beach/Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,219 reviews)
"Great view of the ocean and easy acces to it!"
United States
Derek
The price is ฿8,241
฿9,307 total
includes taxes & fees
12 Apr - 13 Apr
Surfer Beach Hotel

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,185 reviews)
"Location was nice and the beach being right there was great!"
United States
Brenda
The price is ฿8,407
฿11,362 total
includes taxes & fees
12 Apr - 13 Apr
Catamaran Resort and Spa

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,965 reviews)
"Great stay"
United States
Lizeth
The price is ฿3,303
฿3,796 total
includes taxes & fees
16 Mar - 17 Mar
GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,555 reviews)
"Room was nice, clean, staff was friendly, "
United States
philip
The price is ฿3,337
฿3,769 total
includes taxes & fees
29 Mar - 30 Mar
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (256 reviews)
"Great location. "
United States
Xihao
The price is ฿4,450
฿5,017 total
includes taxes & fees
23 Mar - 24 Mar
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,317 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is ฿1,931
฿2,219 total
includes taxes & fees
29 Mar - 30 Mar
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,181 reviews)
"The room was spotless and the staff were very helpful and welcoming would definitely stay here again "
United States
Raul
The price is ฿3,101
฿3,564 total
includes taxes & fees
22 Mar - 23 Mar
Wyndham Garden San Diego Near SeaWorld
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 49 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 49 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Junipero Serra Museum or Whaley House Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.