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Our top choices for Mission Bay hotels

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (204 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
ITH Mission Beach Backpacker Hostel

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,055 reviews)
"Clean rooms, friendly staff."
United States
Eric
The price is ฿5,033
฿6,513 total
includes taxes & fees
22 Feb - 23 Feb
The Dana on Mission Bay

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,400 reviews)
"Clean rooms, friendly staff, and a beautiful view all around.. "
United States
Morgan
The price is ฿4,543
฿6,897 total
includes taxes & fees
22 Feb - 23 Feb
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,728 reviews)
"rooms were very nice staff was helpful location was excellent"
United States
Michele
The price is ฿6,433
฿7,394 total
includes taxes & fees
11 Feb - 12 Feb
The Wayfarer San Diego

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.2 out of 10, Wonderful, (289 reviews)
"Everything was great!"
United States
Sophia
The price is ฿5,624
฿6,341 total
includes taxes & fees
10 Feb - 11 Feb
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (600 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is ฿4,278
฿4,918 total
includes taxes & fees
15 Feb - 16 Feb
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,001 reviews)
"Good location with friendly staff"
United States
Frank
The price is ฿4,432
฿5,094 total
includes taxes & fees
9 Feb - 10 Feb
The Beach Cottages

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,001 reviews)
"very spacious room very clean close to everything restaurant stores Central located."
United States
Walter
The price is ฿4,653
฿5,349 total
includes taxes & fees
23 Feb - 24 Feb
Holiday Inn Express San Diego - SeaWorld Area by IHG

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,341 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is ฿5,983
฿8,551 total
includes taxes & fees
1 Mar - 2 Mar
San Diego Mission Bay Resort

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,866 reviews)
"Amazing place "
United States
Richard
The price is ฿5,086
฿7,606 total
includes taxes & fees
6 Feb - 7 Feb
Bahia Resort Hotel

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,596 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is ฿5,033
฿7,460 total
includes taxes & fees
5 Feb - 6 Feb
Hyatt Regency Mission Bay Spa and Marina

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.4 out of 10, Very good, (258 reviews)
"Clean hotel & great location. "
United States
yardley
The price is ฿2,798
฿3,217 total
includes taxes & fees
10 Feb - 11 Feb
Best Western San Diego Pacific Beach/Mission Bay

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,326 reviews)
"Nice beds and breakfast, really convenient "
Canada
Margarita
The price is ฿2,960
฿3,402 total
includes taxes & fees
10 Feb - 11 Feb
Comfort Inn Sea World Area

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,196 reviews)
"Room was clean, staff was great, great location, will definitely stay there again.."
United States
Kimberly
The price is ฿5,291
฿5,976 total
includes taxes & fees
24 Feb - 25 Feb
Surfer Beach Hotel

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,921 reviews)
"The staff was very nice and great location"
United States
Curtis
The price is ฿2,546
฿2,927 total
includes taxes & fees
8 Feb - 9 Feb
GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,518 reviews)
"Room was nice, clean, staff was friendly, "
United States
philip
The price is ฿2,646
฿2,989 total
includes taxes & fees
10 Feb - 11 Feb
SureStay Hotel by Best Western San Diego Pacific Beach

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,138 reviews)
"Great location! Wonderful staff, clean facilities, lots to do."
United States
Elizabeth
The price is ฿5,624
฿8,153 total
includes taxes & fees
8 Feb - 9 Feb
Catamaran Resort and Spa

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (255 reviews)
"Ocean view couldnt be better Why i picked this Not normally a hostel woman"
United States
Vickie
The price is ฿3,692
฿4,163 total
includes taxes & fees
10 Feb - 11 Feb
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,232 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is ฿1,931
฿2,220 total
includes taxes & fees
11 Feb - 12 Feb
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,162 reviews)
"Good location friendly staff"
United States
Anya
The price is ฿2,977
฿3,422 total
includes taxes & fees
10 Feb - 11 Feb
Wyndham Garden San Diego Near SeaWorld
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 45 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 45 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.