Search Hotels Near Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Next weekend
In two weeks

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,369 reviews)
"NICE PLACE TO STAY"
United States
René
The price is ฿6,143
฿7,996 total
includes taxes & fees
3 Jun - 4 Jun
The Dana on Mission Bay

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (376 reviews)
"Amazing spot would recommend it 10 outta 10!!"
United States
Hardeep
The price is ฿5,923
฿6,678 total
includes taxes & fees
3 Jun - 4 Jun
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,618 reviews)
"Beautiful Vacation spot."
United States
Daniel
The price is ฿7,486
฿10,325 total
includes taxes & fees
7 Jun - 8 Jun
Paradise Point Resort & Spa

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (216 reviews)
"Staff was great, all areas of the property were clean and I felt safe"
United States
Jessi
The price is ฿4,002
฿4,512 total
includes taxes & fees
4 Jun - 5 Jun
ITH Mission Beach Backpacker Hostel

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,784 reviews)
"Beautiful property and great location."
United States
Michael
The price is ฿9,069
฿10,424 total
includes taxes & fees
2 Jun - 3 Jun
The Wayfarer San Diego

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.6 out of 10, Excellent, (1,455 reviews)
"Great resort!"
United States
Jean-Michelle
The price is ฿7,515
฿10,357 total
includes taxes & fees
3 Jun - 4 Jun
San Diego Mission Bay Resort

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,005 reviews)
"We enjoyed our stay! Our room was clean and the staff were friendly. We also enjoyed the yummy breakfast. We definitely recommend to anyone who is visiting SD and visiting the zoo or sea world!"
United States
Isela
The price is ฿5,363
฿6,165 total
includes taxes & fees
3 Jun - 4 Jun
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.8 out of 10, Excellent, (2,113 reviews)
"Location was great, staff was nice and accommodating"
United States
Moshe
The price is ฿6,699
฿9,505 total
includes taxes & fees
7 Jun - 8 Jun
Bahia Resort Hotel

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (998 reviews)
"Staff was amazing and loved the place"
United States
Angela
The price is ฿4,858
฿5,584 total
includes taxes & fees
3 Jun - 4 Jun
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (896 reviews)
"Great service from start to finish and very clean hotel "
United States
Jesus
The price is ฿4,421
฿5,081 total
includes taxes & fees
8 Jun - 9 Jun
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,627 reviews)
"Amazing place!"
United States
Yesenia
The price is ฿5,981
฿8,594 total
includes taxes & fees
2 Jun - 3 Jun
Hyatt Regency Mission Bay Spa and Marina

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,260 reviews)
"Great location, super nice staff and perfect room"
United States
Alexandre
The price is ฿7,416
฿10,255 total
includes taxes & fees
4 Jun - 5 Jun
Catamaran Resort and Spa

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,725 reviews)
"Excellent location, friendly staff, plenty of parking and full buffet breakfast."
United States
Sammy
The price is ฿3,803
฿4,371 total
includes taxes & fees
7 Jun - 8 Jun
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (403 reviews)
"The stay was good and close to the zoo and beach also shopping"
United States
Carol
The price is ฿3,118
฿3,584 total
includes taxes & fees
9 Jun - 10 Jun
Best Western San Diego Pacific Beach/Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,294 reviews)
"Great area to be at on the beach. There were some great breakfast spots right next to the hotel which was a huge plus."
United States
Richard James
The price is ฿6,014
฿6,792 total
includes taxes & fees
4 Jun - 5 Jun
Surfer Beach Hotel

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,145 reviews)
"Great experience, will stay here again"
United States
Victoria
The price is ฿3,660
฿4,207 total
includes taxes & fees
7 Jun - 8 Jun
GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,568 reviews)
"Nice room clean good breakfast"
United States
Michael
The price is ฿3,061
฿3,457 total
includes taxes & fees
3 Jun - 4 Jun
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (263 reviews)
"Great location. "
United States
Xihao
The price is ฿2,016
฿2,273 total
includes taxes & fees
3 Jun - 4 Jun
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,484 reviews)
"I really like the hotel Was close to sea world and lots of eating places with in walking distance."
United States
Latrice
The price is ฿2,355
฿2,707 total
includes taxes & fees
2 Jun - 3 Jun
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,235 reviews)
"Nice stay, clean room"
United States
Luis
The price is ฿3,675
฿4,224 total
includes taxes & fees
7 Jun - 8 Jun
Wyndham Garden San Diego Near SeaWorld
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,369 reviews
View
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
376 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,618 reviews
View
Beach nearby, 5 beach bars
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
216 reviews
View
Outdoor pool, a heated pool
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,784 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 46 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 46 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, San Diego Black Ensemble Theater and Cygnet Theater Company.