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Our top choices for Mission Bay hotels

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (349 reviews)
"Great access to the ocean and Mission Bay. "
United States
Lisa
The price is ฿4,896
฿5,520 total
includes taxes & fees
4 May - 5 May
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,326 reviews)
"Beautiful property right in Mission Bay. Nice clean rooms, professional staff and great ammenities. Close to Seaworld, airport, and several beaches."
United States
Matthew
The price is ฿5,796
฿7,406 total
includes taxes & fees
10 May - 11 May
The Dana on Mission Bay

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (210 reviews)
"I’ve stayed at ITH Mission Beach a few times and every time I enjoy my stay. They offer many activities to do, the staff is very friendly and you can’t beat the location. One of the better hostels in San Diego. I highly recommend . "
United States
Kimberley
The price is ฿3,042
฿3,430 total
includes taxes & fees
5 May - 6 May
ITH Mission Beach Backpacker Hostel

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,572 reviews)
"Everything was really nice and clean. Staff was very attentive and helpful and a great place right on the water in mission bay. "
United States
Stephen
The price is ฿6,736
฿9,457 total
includes taxes & fees
10 May - 11 May
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,769 reviews)
"Staff was incredibly friendly and rooms very clean. Great location right next to the beach."
United States
Chris
The price is ฿6,611
฿7,598 total
includes taxes & fees
25 May - 26 May
The Wayfarer San Diego

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,007 reviews)
"Great location for Sea World theme park. . Friendly and courteous staff. Parking was easily accessible. Breakfast was great. "
United States
Maritza
The price is ฿4,533
฿5,210 total
includes taxes & fees
10 May - 11 May
Holiday Inn Express San Diego - SeaWorld Area by IHG

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (892 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is ฿4,736
฿5,444 total
includes taxes & fees
10 May - 11 May
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Mission Bay Motel

Mission Bay Motel
Pacific Beach, 3 km from Mission Bay
10.0 out of 10, Exceptional, (4 reviews)
"Stayed at Mission Beach Motel and it’s all about the location—absolutely unbeatable. You’re within walking distance to pretty much everything, which made exploring San Diego effortless. The place itself is no-frills, but it’s clean and comfortable, which is really all you need when you’re spending most of your time out enjoying the beach and the city. If you’re looking for luxury, this isn’t it—but if you want a simple, well-located spot to crash while you enjoy San Diego, it does the job...
United States
Darshan
The price is ฿3,238
฿3,651 total
includes taxes & fees
10 May - 11 May
Mission Bay Motel

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,436 reviews)
"Staff were very friendly and accommodating The resort was beautiful and location was amazing"
United States
Valerie
The price is ฿7,091
฿9,863 total
includes taxes & fees
10 May - 11 May
San Diego Mission Bay Resort

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (2,046 reviews)
"Great location, private beach, great food at the restaurants. Short walk to Mission Beach which is awesome. Outdoor Pool and hot tub is a nice feature to have. Overall Great place to stay"
Canada
Bond
The price is ฿5,477
฿8,096 total
includes taxes & fees
17 May - 18 May
Bahia Resort Hotel

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,003 reviews)
"The cottages are an excellent way to stay in Pacific Beach if you want location and affordability. It is right on the beach but is very reasonably priced. The rooms are very clean and have everything you will need including grills, and outdoor activities like ping pong."
United States
Julie
The price is ฿5,659
฿6,504 total
includes taxes & fees
4 May - 5 May
The Beach Cottages

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,625 reviews)
"Great hotel with great staff and amenities. Great location for a San Diego get away."
United States
Donald
The price is ฿5,472
฿8,003 total
includes taxes & fees
10 May - 11 May
Hyatt Regency Mission Bay Spa and Marina

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (882 reviews)
"Great property right off the freeway. Close to playground and mission bay. A few minute drive to plenty of food option in pacific beach Traffic can be noisy since it’s right off the freeway"
United States
Christopher
The price is ฿4,242
฿4,876 total
includes taxes & fees
11 May - 12 May
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (376 reviews)
"Everything is freshly renewed, smells great , breakfast included & close to alot of things! Mission Bay is across the bridge with lots of play area for the littles! Loved it "
United States
Blanca
The price is ฿2,821
฿3,242 total
includes taxes & fees
10 May - 11 May
Best Western San Diego Pacific Beach/Mission Bay

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,628 reviews)
"Very convenient location, friendly staff, breakfast was good! great gym too! we were really close to Seaworld."
United States
Alexander
The price is ฿3,497
฿4,020 total
includes taxes & fees
11 May - 12 May
Comfort Inn Sea World Area

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,063 reviews)
"Location is great. About 8-12 min drive yo places like La Jolla, Old Town, Little Italy, SD zoo. Double bed rooms are a bit compact, but we didn’t mind considering we spent most of our time exploring. "
United States
Paola
The price is ฿3,383
฿3,889 total
includes taxes & fees
14 May - 15 May
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,269 reviews)
"The location and staff makes this hotel stand out! Right off the boardwalk, walkable to downtown Pacific Beach night life and food or go the other direction for endless beach access. It is an older hotel in structure and room style, with very basic amenities, but clean and extremely sound proof! We would definitely stay again. Thank you Surfer Beach for a wonderful vacation!!"
United States
Rachel
The price is ฿7,382
฿8,338 total
includes taxes & fees
4 May - 5 May
Surfer Beach Hotel

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,571 reviews)
"Breakfast was great, staff were great, definitely my favorite budget hotel! The location is excellent, too, just a few minutes from the boardwalk, and a 3 minute drive to pacific park."
United States
Peter
The price is ฿3,230
฿3,648 total
includes taxes & fees
6 May - 7 May
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (258 reviews)
"What an amazing bunch of people running the most comfortable place in all of San Diego. "
United States
Jerry
The price is ฿1,856
฿2,093 total
includes taxes & fees
12 May - 13 May
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,422 reviews)
"Clean room, decent parking, and close to the beach "
United States
Curtis
The price is ฿2,200
฿2,528 total
includes taxes & fees
4 May - 5 May
Heritage Inn San Diego
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
349 reviews
View
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,326 reviews
View
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
210 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,572 reviews
View
Outdoor pool, a heated pool
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,769 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 47 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 47 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.