Search Hotels Near Mission Bay, San Diego

Start date: Check-in selected.
To Date
End date: Check-out

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
7 Jan - 8 Jan
Tomorrow
8 Jan - 9 Jan
This weekend
9 Jan - 11 Jan
Next weekend
16 Jan - 18 Jan

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

Living area
ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (201)
"great location and free parking available across the street. "
United States
Saquib
ITH Mission Beach Backpacker Hostel
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (3968)
"We had a wonderful stay!"
United States
Megan
The price is ฿4,336
฿5,608 total
includes taxes & fees
12 Jan - 13 Jan
The Dana on Mission Bay
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (278)
"Love the layout! Room was spacious and clean! Full kitchenette made it very convenient!"
United States
evan
The price is ฿4,393
฿4,953 total
includes taxes & fees
12 Jan - 13 Jan
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
View from property
The Wayfarer San Diego

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1718)
"Great location with easy access to the beach and everything with walking distance."
United States
Jeremy
The price is ฿4,286
฿4,927 total
includes taxes & fees
12 Jan - 13 Jan
The Wayfarer San Diego
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.6 out of 10, Excellent, (2364)
"Great facility and amenities. We look forward to taking our family back again. "
United States
Andy
The price is ฿3,223
฿5,363 total
includes taxes & fees
20 Jan - 21 Jan
Paradise Point Resort & Spa
Reception
Hampton Inn & Suites by Hilton San Diego SeaWorld

Hampton Inn & Suites by Hilton San Diego SeaWorld

Hampton Inn & Suites by Hilton San Diego SeaWorld
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (506)
"Excellent hotel!"
United States
Jorge
The price is ฿3,435
฿3,948 total
includes taxes & fees
19 Jan - 20 Jan
Hampton Inn & Suites by Hilton San Diego SeaWorld
On the beach
The Beach Cottages

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1002)
"Staff was very helpful, place was clean, fun with all the Xmas bars and restaurants."
United States
Gay Marie
The price is ฿3,432
฿3,945 total
includes taxes & fees
12 Jan - 13 Jan
The Beach Cottages
Suite, Multiple Beds | In-room safe, desk, laptop workspace, blackout curtains
Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1001)
"Nice hotel one bus stop from SeaWorld "
United States
Marc
The price is ฿4,104
฿4,717 total
includes taxes & fees
20 Jan - 21 Jan
Holiday Inn Express San Diego - SeaWorld Area by IHG
Breakfast, lunch, dinner served; Mediterranean cuisine
Bahia Resort Hotel

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1836)
"Friendly staff and beautiful property "
United States
Cherron
The price is ฿4,216
฿6,583 total
includes taxes & fees
12 Jan - 13 Jan
Bahia Resort Hotel
Free continental breakfast
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
2.5 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (823)
"Great food & staff!"
United States
Celeste T
The price is ฿3,089
฿3,550 total
includes taxes & fees
19 Jan - 20 Jan
Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3 outdoor pools, pool cabanas (surcharge), pool umbrellas
Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1599)
"Beautiful grounds with lots of activities for all ages."
United States
Brandon
The price is ฿4,464
฿6,782 total
includes taxes & fees
21 Jan - 22 Jan
Hyatt Regency Mission Bay Spa and Marina
Outdoor pool, open 7:00 AM to 10:00 PM, pool cabanas (surcharge)
San Diego Mission Bay Resort

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1332)
"Loved the bay front room with the large grass area right out the door!"
United States
Todd and Danielle
The price is ฿4,765
฿7,133 total
includes taxes & fees
2 Feb - 3 Feb
San Diego Mission Bay Resort
Premium bedding, pillow-top beds, in-room safe, desk
Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.4 out of 10, Very good, (222)
"Nice hotel and great value "
United States
Patrick
The price is ฿2,133
฿2,452 total
includes taxes & fees
14 Jan - 15 Jan
Best Western San Diego Pacific Beach/Mission Bay
Lobby
Comfort Inn Sea World Area

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3229)
"Great location, friendly staff 👍 "
United States
Maria
The price is ฿2,387
฿2,743 total
includes taxes & fees
13 Jan - 14 Jan
Comfort Inn Sea World Area
Fishing
Surfer Beach Hotel

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1189)
"The view was terrific, even with the restaurant roof right in front of the room. "
United States
Susan
The price is ฿4,243
฿4,792 total
includes taxes & fees
11 Jan - 12 Jan
Surfer Beach Hotel
Lobby sitting area
GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1901)
"The staff was very nice and great location"
United States
Curtis
The price is ฿2,754
฿3,166 total
includes taxes & fees
12 Jan - 13 Jan
GreenTree Inn San Diego Mission Bay
Property amenity
Catamaran Resort and Spa

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1120)
"Great place to vacation. "
United States
Manuel
The price is ฿4,987
฿7,405 total
includes taxes & fees
8 Feb - 9 Feb
Catamaran Resort and Spa
Free breakfast
SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1465)
"Clean room , good breakfast, convenient location "
United States
Angela
The price is ฿1,976
฿2,232 total
includes taxes & fees
13 Jan - 14 Jan
SureStay Hotel by Best Western San Diego Pacific Beach
Sun deck
ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (254)
"Ocean view couldnt be better Why i picked this Not normally a hostel woman"
United States
Vickie
The price is ฿2,224
฿2,507 total
includes taxes & fees
12 Jan - 13 Jan
ITH Beach Bungalow Surf Hostel
Outdoor pool
Heritage Inn San Diego

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1193)
"The room was nice"
United States
Charlotte
The price is ฿1,709
฿1,964 total
includes taxes & fees
18 Jan - 19 Jan
Heritage Inn San Diego
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Mission Bay Hotel Reviews

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld

10/10 Excellent
"The place is nice, I didn’t know about that place needed to pay for the parking. It’s very hard to look for the room. "
Shirley 1-night trip
Posted 5 days ago
Wyndham Garden San Diego Near SeaWorld

Hotels near other Mission Bay attractions

Mission Bay Park

4.4/5 (165 reviews)
Mission Bay Park is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Discover the beautiful sunsets in this walkable area or enjoy its surfing spots.
See properties

Ski Beach

Why not spend a lazy afternoon at Ski Beach during your trip to San Diego?
See properties

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 45 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
San Diego Mission Bay Resort is one of the top choices for your stay based on our traveller data, and this hotel offers a full-service spa and 2 restaurants. It's located just a short 1 mi (1.6 km) from Mission Bay. Another good option is Paradise Point Resort & Spa, located just 0.7 mi (1.2 km) away.
How many hotels will I find near Mission Bay?
Expedia has 45 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.