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Our top choices for Mission Bay hotels

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (210 reviews)
"This was the best! I loved staying here. Friday night burgers and pancake breakfast. It beat every hotel easily and to add to it, the volunteers were so hospitable. I really connected with them all. It felt like a distant family reunion."
United States
Paul
The price is ฿4,208
฿4,744 total
includes taxes & fees
12 May - 13 May
ITH Mission Beach Backpacker Hostel

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,351 reviews)
"It is a beautiful place to stay."
United States
Dorothy
The price is ฿6,408
฿8,291 total
includes taxes & fees
17 May - 18 May
The Dana on Mission Bay

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (360 reviews)
"Great location and clean room! The two bedroom setup was great!"
United States
Lindsay
The price is ฿6,174
฿6,961 total
includes taxes & fees
12 May - 13 May
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,588 reviews)
"Great resort for relaxing and enjoying the beachfront access."
United States
narine
The price is ฿7,005
฿9,756 total
includes taxes & fees
25 May - 26 May
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,777 reviews)
"Great location cute little beach hotel "
United States
Timothy
The price is ฿6,672
฿7,669 total
includes taxes & fees
11 May - 12 May
The Wayfarer San Diego

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,011 reviews)
"Property was in excellent condition staff was super friendly and the breakfast was amazing "
United States
Nedeshda
The price is ฿4,798
฿5,515 total
includes taxes & fees
31 May - 1 Jun
Holiday Inn Express San Diego - SeaWorld Area by IHG

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (921 reviews)
"The hotel was super clean and close to a lot of good food places!"
United States
Buna
The price is ฿4,710
฿5,414 total
includes taxes & fees
14 May - 15 May
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,452 reviews)
"Perfect place for a family trip "
United States
Krystal
The price is ฿6,730
฿9,438 total
includes taxes & fees
25 May - 26 May
San Diego Mission Bay Resort

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (2,064 reviews)
"Nice place to stay with the kids."
United States
Paul
The price is ฿5,639
฿8,272 total
includes taxes & fees
18 May - 19 May
Bahia Resort Hotel

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (887 reviews)
"Good breakfast, easy parking and clean room."
United States
Anina
The price is ฿4,798
฿5,515 total
includes taxes & fees
31 May - 1 Jun
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,632 reviews)
"Great hotel with great staff and amenities. Great location for a San Diego get away."
United States
Donald
The price is ฿5,764
฿8,329 total
includes taxes & fees
25 May - 26 May
Hyatt Regency Mission Bay Spa and Marina

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,246 reviews)
"Food at the restaurants was excellent. Wonderful and friendly staff as well."
United States
Mary
The price is ฿6,815
฿9,550 total
includes taxes & fees
20 May - 21 May
Catamaran Resort and Spa

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,649 reviews)
"Will stay again"
United States
Louis
The price is ฿3,478
฿3,997 total
includes taxes & fees
25 May - 26 May
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (382 reviews)
"The stay was good and close to the zoo and beach also shopping"
United States
Carol
The price is ฿2,805
฿3,225 total
includes taxes & fees
25 May - 26 May
Best Western San Diego Pacific Beach/Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,288 reviews)
"Staff was helpful! Love staying here !"
United States
Jonathan
The price is ฿6,054
฿6,837 total
includes taxes & fees
12 May - 13 May
Surfer Beach Hotel

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,085 reviews)
"Staff was friendly and the hotel had good parking and clean rooms"
United States
Levi
The price is ฿3,365
฿3,867 total
includes taxes & fees
28 May - 29 May
GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,580 reviews)
"Nice room clean good breakfast"
United States
Michael
The price is ฿3,381
฿3,819 total
includes taxes & fees
11 May - 12 May
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (259 reviews)
"Great location. "
United States
Xihao
The price is ฿1,846
฿2,081 total
includes taxes & fees
12 May - 13 May
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,439 reviews)
"It's perfect for spending the night when you have an early flight—super close to the San Diego airport. The rooms are clean and nice."
United States
areli
The price is ฿2,101
฿2,415 total
includes taxes & fees
11 May - 12 May
Heritage Inn San Diego

Mission Bay Motel

Mission Bay Motel
Pacific Beach, 3 km from Mission Bay
7.2 out of 10, Good, (15 reviews)
"Great location—literally just a block from the beach! The property was clean, comfortable, and within walking distance to everything we needed. Staying here made our time in San Diego even better, especially since it was so reasonably priced. Would definitely recommend! "
United States
Victoria
The price is ฿3,381
฿3,812 total
includes taxes & fees
18 May - 19 May
Mission Bay Motel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
210 reviews
View
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,351 reviews
View
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
360 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,588 reviews
View
Outdoor pool, a heated pool
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,777 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 47 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 47 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.