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Our top choices for Mission Bay hotels

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (325 reviews)
"Excellent location, great and helpful staff and super cute room! We'd stay here again for sure!"
United States
Charissa
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (207 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
ITH Mission Beach Backpacker Hostel

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,187 reviews)
"Clean room, staff was friendly, overall great place to stay. "
United States
Amber
The price is ฿6,052
฿7,713 total
includes taxes & fees
5 Apr - 6 Apr
The Dana on Mission Bay

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,467 reviews)
"Great family place to stay. "
United States
Vera
The price is ฿7,781
฿10,684 total
includes taxes & fees
5 Apr - 6 Apr
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,756 reviews)
"An amazing location and super friendly staff."
United States
Michael
The price is ฿8,030
฿9,230 total
includes taxes & fees
12 Apr - 13 Apr
The Wayfarer San Diego

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (747 reviews)
"Breakfast area was very nice"
United States
Heidi
The price is ฿5,114
฿5,878 total
includes taxes & fees
29 Mar - 30 Mar
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,006 reviews)
"Room was great, very clean. Front desk was super helpful and kind. Great location and would recommend to anyone staying in Pacific beach. "
United States
Hailey
The price is ฿5,748
฿6,607 total
includes taxes & fees
5 Apr - 6 Apr
The Beach Cottages

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,002 reviews)
"Great location and friendly staff. Just as described. Very happy with our stay."
United States
Bruna
The price is ฿5,592
฿6,427 total
includes taxes & fees
5 Apr - 6 Apr
Holiday Inn Express San Diego - SeaWorld Area by IHG

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,382 reviews)
"Nice place and conveniently close to attractions and good restaurants."
United States
Joel
The price is ฿7,861
฿10,775 total
includes taxes & fees
5 Apr - 6 Apr
San Diego Mission Bay Resort

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,930 reviews)
"The resort was great. "
United States
Clifford
The price is ฿7,078
฿9,962 total
includes taxes & fees
21 Apr - 22 Apr
Bahia Resort Hotel

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (868 reviews)
"Great place, great location, very comfortable!"
United States
Javier
The price is ฿4,276
฿4,915 total
includes taxes & fees
5 Apr - 6 Apr
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,606 reviews)
"clean rooms, beds were comfortable, pools were good, breakfast place was very nice."
United States
sandeep
The price is ฿6,842
฿9,604 total
includes taxes & fees
5 Apr - 6 Apr
Hyatt Regency Mission Bay Spa and Marina

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,505 reviews)
"It was very clean and comfortable would stay again "
United States
Amparo
The price is ฿3,552
฿4,083 total
includes taxes & fees
5 Apr - 6 Apr
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (315 reviews)
"Nice staff and good breakfast."
United States
Carol
The price is ฿3,188
฿3,664 total
includes taxes & fees
5 Apr - 6 Apr
Best Western San Diego Pacific Beach/Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,980 reviews)
"Great stay"
United States
Lizeth
The price is ฿3,437
฿3,951 total
includes taxes & fees
29 Mar - 30 Mar
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,231 reviews)
"Clean room, very kind staff, beautiful view! "
United States
Michelle
The price is ฿7,828
฿8,842 total
includes taxes & fees
21 Apr - 22 Apr
Surfer Beach Hotel

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,200 reviews)
"Location was nice and the beach being right there was great!"
United States
Brenda
The price is ฿8,360
฿11,359 total
includes taxes & fees
19 Apr - 20 Apr
Catamaran Resort and Spa

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,560 reviews)
"Yes only thing the room was clean one time in our five nights ther"
United States
Angel
The price is ฿3,473
฿3,923 total
includes taxes & fees
29 Mar - 30 Mar
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (257 reviews)
"Great location. "
United States
Xihao
The price is ฿4,867
฿5,487 total
includes taxes & fees
23 Apr - 24 Apr
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,332 reviews)
"We had a great stay at heritage inn, room was clean and tidy and location was great for our stay. "
Canada
calvin
The price is ฿2,175
฿2,500 total
includes taxes & fees
21 Apr - 22 Apr
Heritage Inn San Diego
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
325 reviews
View
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
207 reviews
View
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,187 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,467 reviews
View
View from property
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,756 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 52 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 52 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Junipero Serra Museum or Whaley House Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.