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Our top choices for Mission Bay hotels

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (312 reviews)
"Great place to stay when you are in San Diego! Total beach vibes. Super clean and easy to check in. Definitely will be booking there again! "
United States
Carla
The price is ฿6,016
฿6,783 total
includes taxes & fees
12 Mar - 13 Mar
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,156 reviews)
"Great location and grounds!"
United States
Ethan
The price is ฿5,341
฿6,866 total
includes taxes & fees
5 Apr - 6 Apr
The Dana on Mission Bay

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,743 reviews)
"Beautiful place. "
United States
Roxana
The price is ฿9,127
฿10,491 total
includes taxes & fees
12 Mar - 13 Mar
The Wayfarer San Diego

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.6 out of 10, Excellent, (2,455 reviews)
"Clean Rooms, staff very friendly, very relaxing place "
United States
AlmaDelia
The price is ฿6,275
฿8,886 total
includes taxes & fees
5 Apr - 6 Apr
Paradise Point Resort & Spa

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (714 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is ฿5,205
฿5,983 total
includes taxes & fees
5 Apr - 6 Apr
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,001 reviews)
"Good location with friendly staff"
United States
Frank
The price is ฿5,523
฿6,349 total
includes taxes & fees
5 Apr - 6 Apr
The Beach Cottages

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,001 reviews)
"very spacious room very clean close to everything restaurant stores Central located."
United States
Walter
The price is ฿5,689
฿6,539 total
includes taxes & fees
5 Apr - 6 Apr
Holiday Inn Express San Diego - SeaWorld Area by IHG

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,365 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is ฿8,186
฿11,081 total
includes taxes & fees
15 Mar - 16 Mar
San Diego Mission Bay Resort

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,906 reviews)
"Amazing place "
United States
Richard
The price is ฿5,615
฿8,211 total
includes taxes & fees
5 Apr - 6 Apr
Bahia Resort Hotel

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,615 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is ฿5,974
฿8,539 total
includes taxes & fees
5 Apr - 6 Apr
Hyatt Regency Mission Bay Spa and Marina

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,464 reviews)
"Nice beds and breakfast, really convenient "
Canada
Margarita
The price is ฿3,358
฿3,860 total
includes taxes & fees
29 Mar - 30 Mar
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (295 reviews)
"Clean hotel & great location. "
United States
yardley
The price is ฿3,818
฿4,389 total
includes taxes & fees
5 Apr - 6 Apr
Best Western San Diego Pacific Beach/Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,973 reviews)
"Great stay"
United States
Lizeth
The price is ฿3,303
฿3,796 total
includes taxes & fees
15 Mar - 16 Mar
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,218 reviews)
"Room was clean, staff was great, great location, will definitely stay there again.."
United States
Kimberly
The price is ฿8,172
฿9,230 total
includes taxes & fees
12 Mar - 13 Mar
Surfer Beach Hotel

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,556 reviews)
"Room was nice, clean, staff was friendly, "
United States
philip
The price is ฿3,337
฿3,769 total
includes taxes & fees
6 Apr - 7 Apr
SureStay Hotel by Best Western San Diego Pacific Beach

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,184 reviews)
"Location! "
United States
Jennifer
The price is ฿9,376
฿12,456 total
includes taxes & fees
15 Mar - 16 Mar
Catamaran Resort and Spa

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (256 reviews)
"Great location. "
United States
Xihao
The price is ฿4,437
฿5,003 total
includes taxes & fees
23 Mar - 24 Mar
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,315 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is ฿1,959
฿2,252 total
includes taxes & fees
30 Mar - 31 Mar
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,203 reviews)
"Good location friendly staff"
United States
Anya
The price is ฿2,822
฿3,244 total
includes taxes & fees
12 Mar - 13 Mar
Wyndham Garden San Diego Near SeaWorld

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.6 out of 10, (2,098 reviews)
"Clean rooms and great staff "
United States
Darren
The price is ฿2,213
฿2,544 total
includes taxes & fees
12 Mar - 13 Mar
E-Z 8 Motel Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 49 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 49 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Junipero Serra Museum or Whaley House Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.