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Our top choices for Mission Bay hotels

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (3,986 reviews)
"We had a wonderful stay!"
United States
Megan
The price is ฿4,674
฿6,001 total
includes taxes & fees
14 Jan - 15 Jan
The Dana on Mission Bay

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (202 reviews)
"great location and free parking available across the street. "
United States
Saquib
ITH Mission Beach Backpacker Hostel

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (280 reviews)
"Wonderful mission beach stay! The room had a great kitchenette and small dining table/chairs. Super close to the beach. We rented the free bicycles and rode up the coast which was super fun! Private hot tub was great to relax in at the end of the day."
United States
Katherine
The price is ฿4,655
฿5,248 total
includes taxes & fees
14 Jan - 15 Jan
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,725 reviews)
"Great location with easy access to the beach and everything with walking distance."
United States
Jeremy
The price is ฿6,069
฿6,976 total
includes taxes & fees
25 Jan - 26 Jan
The Wayfarer San Diego

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.6 out of 10, Excellent, (2,369 reviews)
"Great facility and amenities. We look forward to taking our family back again. "
United States
Andy
The price is ฿3,215
฿5,349 total
includes taxes & fees
19 Jan - 20 Jan
Paradise Point Resort & Spa

Hampton Inn & Suites by Hilton San Diego SeaWorld

Hampton Inn & Suites by Hilton San Diego SeaWorld
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (516 reviews)
"Excellent hotel!"
United States
Jorge
The price is ฿3,426
฿3,938 total
includes taxes & fees
25 Jan - 26 Jan
Hampton Inn & Suites by Hilton San Diego SeaWorld

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,005 reviews)
"Best beachfront property on the boardwalk!"
United States
Jose
The price is ฿3,437
฿3,950 total
includes taxes & fees
19 Jan - 20 Jan
The Beach Cottages

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,003 reviews)
"very spacious room very clean close to everything restaurant stores Central located."
United States
Walter
The price is ฿3,968
฿4,561 total
includes taxes & fees
25 Jan - 26 Jan
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,844 reviews)
"Friendly staff and beautiful property "
United States
Cherron
The price is ฿4,240
฿6,620 total
includes taxes & fees
14 Jan - 15 Jan
Bahia Resort Hotel

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,334 reviews)
"Loved the bay front room with the large grass area right out the door!"
United States
Todd and Danielle
The price is ฿4,752
฿7,114 total
includes taxes & fees
2 Feb - 3 Feb
San Diego Mission Bay Resort

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,238 reviews)
"Great location, friendly staff 👍 "
United States
Maria
The price is ฿2,510
฿2,885 total
includes taxes & fees
19 Jan - 20 Jan
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.2 out of 10, Very good, (230 reviews)
"Nice hotel and great value "
United States
Patrick
The price is ฿2,127
฿2,445 total
includes taxes & fees
19 Jan - 20 Jan
Best Western San Diego Pacific Beach/Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,192 reviews)
"I love surfer Beach Hotel. It’s close to Woody’s and the duck dive bar and restaurant."
United States
Richard
The price is ฿4,329
฿4,890 total
includes taxes & fees
14 Jan - 15 Jan
Surfer Beach Hotel

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,471 reviews)
"Clean room , good breakfast, convenient location "
United States
Angela
The price is ฿1,979
฿2,235 total
includes taxes & fees
19 Jan - 20 Jan
SureStay Hotel by Best Western San Diego Pacific Beach

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,903 reviews)
"The staff was very nice and great location"
United States
Curtis
The price is ฿2,773
฿3,188 total
includes taxes & fees
14 Jan - 15 Jan
GreenTree Inn San Diego Mission Bay

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (255 reviews)
"Ocean view couldnt be better Why i picked this Not normally a hostel woman"
United States
Vickie
The price is ฿2,575
฿2,903 total
includes taxes & fees
26 Jan - 27 Jan
ITH Beach Bungalow Surf Hostel

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,124 reviews)
"Great location! Wonderful staff, clean facilities, lots to do."
United States
Elizabeth
The price is ฿5,019
฿7,437 total
includes taxes & fees
25 Jan - 26 Jan
Catamaran Resort and Spa

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,206 reviews)
"The Staff was great "
United States
Carey
The price is ฿1,711
฿1,967 total
includes taxes & fees
18 Jan - 19 Jan
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,134 reviews)
"Get location to the airport, safe, great staff, & overall wonderful stay"
United States
Tyler
The price is ฿2,642
฿3,036 total
includes taxes & fees
19 Jan - 20 Jan
Wyndham Garden San Diego Near SeaWorld

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.4 out of 10, (2,085 reviews)
"Clean rooms and great staff "
United States
Darren
The price is ฿1,984
฿2,281 total
includes taxes & fees
18 Jan - 19 Jan
E-Z 8 Motel Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 46 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
San Diego Mission Bay Resort is one of the top choices for your stay based on our traveller data, and this resort offers a full-service spa and 2 restaurants. It's located just a short 1 mi (1.6 km) from Mission Bay. Another good option is Paradise Point Resort & Spa, located just 0.8 mi (1.3 km) away.
How many hotels will I find near Mission Bay?
Expedia has 46 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.