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Our top choices for Mission Bay hotels

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (366 reviews)
"Great place to stay for a couple and a family, lots of food and shops near by and would definitely stay again, coming back soon!"
United States
John
The price is ฿5,532
฿6,237 total
includes taxes & fees
20 May - 21 May
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,367 reviews)
"NICE PLACE TO STAY"
United States
René
The price is ฿6,470
฿8,371 total
includes taxes & fees
25 May - 26 May
The Dana on Mission Bay

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (213 reviews)
"Staff was great, all areas of the property were clean and I felt safe"
United States
Jessi
The price is ฿3,090
฿3,484 total
includes taxes & fees
21 May - 22 May
ITH Mission Beach Backpacker Hostel

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,602 reviews)
"Phenomenal stay!! "
United States
Raymond
The price is ฿7,073
฿9,851 total
includes taxes & fees
25 May - 26 May
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,771 reviews)
"Great location."
United States
Leslie
The price is ฿7,771
฿8,932 total
includes taxes & fees
20 May - 21 May
The Wayfarer San Diego

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,010 reviews)
"amazing breakfast and a great variety with an amazing morning staff"
United States
alyssa
The price is ฿4,942
฿5,681 total
includes taxes & fees
25 May - 26 May
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.8 out of 10, Excellent, (2,084 reviews)
"Nice place to stay with the kids."
United States
Paul
The price is ฿5,530
฿8,165 total
includes taxes & fees
20 May - 21 May
Bahia Resort Hotel

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (956 reviews)
"clean room; friendly staff; great amenities"
United States
Joseph
The price is ฿4,776
฿5,490 total
includes taxes & fees
28 May - 29 May
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (891 reviews)
"Great service from start to finish and very clean hotel "
United States
Jesus
The price is ฿4,519
฿5,195 total
includes taxes & fees
31 May - 1 Jun
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,647 reviews)
"I love staying here. Wish there was more dining options on property"
United States
Stephanie
The price is ฿6,047
฿8,672 total
includes taxes & fees
25 May - 26 May
Hyatt Regency Mission Bay Spa and Marina

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,258 reviews)
"Beautiful hotel grounds"
United States
Stephanie
The price is ฿5,776
฿8,374 total
includes taxes & fees
25 May - 26 May
Catamaran Resort and Spa

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,680 reviews)
"Room is clean, staff are especially helpful and courteous, breakfast was great…all in all made my stay comfortable and convenient because just minutes away from the airport…would stay here again"
United States
Parley Vinn Anastacius
The price is ฿3,219
฿3,700 total
includes taxes & fees
25 May - 26 May
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (389 reviews)
"The stay was good and close to the zoo and beach also shopping"
United States
Carol
The price is ฿2,833
฿3,256 total
includes taxes & fees
25 May - 26 May
Best Western San Diego Pacific Beach/Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,112 reviews)
"Great experience, will stay here again"
United States
Victoria
The price is ฿3,397
฿3,905 total
includes taxes & fees
3 Jun - 4 Jun
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,280 reviews)
"Staff was helpful! Love staying here !"
United States
Jonathan
The price is ฿6,303
฿7,119 total
includes taxes & fees
25 May - 26 May
Surfer Beach Hotel

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,566 reviews)
"Nice room clean good breakfast"
United States
Michael
The price is ฿3,251
฿3,672 total
includes taxes & fees
20 May - 21 May
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (259 reviews)
"Great location. "
United States
Xihao
The price is ฿1,978
฿2,230 total
includes taxes & fees
10 Jun - 11 Jun
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,455 reviews)
"I really like the hotel Was close to sea world and lots of eating places with in walking distance."
United States
Latrice
The price is ฿2,297
฿2,640 total
includes taxes & fees
25 May - 26 May
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,233 reviews)
"Nice stay, clean room"
United States
Luis
The price is ฿2,906
฿3,340 total
includes taxes & fees
31 May - 1 Jun
Wyndham Garden San Diego Near SeaWorld

Mission Bay Motel

Mission Bay Motel
Pacific Beach, 3 km from Mission Bay
7.2 out of 10, Good, (20 reviews)
"Great location—literally just a block from the beach! The property was clean, comfortable, and within walking distance to everything we needed. Staying here made our time in San Diego even better, especially since it was so reasonably priced. Would definitely recommend! "
United States
Victoria
The price is ฿3,024
฿3,409 total
includes taxes & fees
28 May - 29 May
Mission Bay Motel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
366 reviews
View
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,367 reviews
View
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
213 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,602 reviews
View
Outdoor pool, a heated pool
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,771 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 44 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 44 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, San Diego Black Ensemble Theater and Cygnet Theater Company.