Search Hotels Near Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,143 reviews)
"clean room, great location, friendly staff, beautiful grounds"
United States
Rebecca
The price is ฿5,439
฿6,991 total
includes taxes & fees
5 Apr - 6 Apr
The Dana on Mission Bay

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,748 reviews)
"Rooms were clean, pool was great, right next to the beach, will definitely stay again!"
United States
Emma
The price is ฿9,243
฿10,624 total
includes taxes & fees
12 Apr - 13 Apr
The Wayfarer San Diego

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (721 reviews)
"Breakfast area was very nice"
United States
Heidi
The price is ฿5,004
฿5,751 total
includes taxes & fees
29 Mar - 30 Mar
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.6 out of 10, Excellent, (2,449 reviews)
"Clean rooms and well maintained resort."
United States
Derek
The price is ฿6,390
฿9,048 total
includes taxes & fees
5 Apr - 6 Apr
Paradise Point Resort & Spa

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,908 reviews)
"Wonderful property, great staff, easy access to the area, such a beautiful stay"
United States
David
The price is ฿5,381
฿7,974 total
includes taxes & fees
12 Apr - 13 Apr
Bahia Resort Hotel

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,366 reviews)
"Clean room, excellent friendly staff, comfortable beds"
Canada
Shauna
The price is ฿7,692
฿10,543 total
includes taxes & fees
5 Apr - 6 Apr
San Diego Mission Bay Resort

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (863 reviews)
"Excellent hotel and really nice breakfast"
United States
Luke
The price is ฿4,216
฿4,846 total
includes taxes & fees
29 Mar - 30 Mar
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,617 reviews)
"Great ocean view!"
United States
Louis
The price is ฿5,632
฿8,176 total
includes taxes & fees
5 Apr - 6 Apr
Hyatt Regency Mission Bay Spa and Marina

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,473 reviews)
"It was very clean and comfortable would stay again "
United States
Amparo
The price is ฿3,283
฿3,773 total
includes taxes & fees
5 Apr - 6 Apr
Comfort Inn Sea World Area

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,188 reviews)
"Location was nice and the beach being right there was great!"
United States
Brenda
The price is ฿8,470
฿11,448 total
includes taxes & fees
12 Apr - 13 Apr
Catamaran Resort and Spa

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (296 reviews)
"Clean hotel & great location. "
United States
yardley
The price is ฿3,888
฿4,469 total
includes taxes & fees
5 Apr - 6 Apr
Best Western San Diego Pacific Beach/Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,219 reviews)
"Great view of the ocean and easy acces to it!"
United States
Derek
The price is ฿7,607
฿8,591 total
includes taxes & fees
31 Mar - 1 Apr
Surfer Beach Hotel

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,967 reviews)
"Great stay"
United States
Lizeth
The price is ฿3,337
฿3,836 total
includes taxes & fees
17 Mar - 18 Mar
GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,552 reviews)
"Room was nice, clean, staff was friendly, "
United States
philip
The price is ฿3,373
฿3,809 total
includes taxes & fees
29 Mar - 30 Mar
SureStay Hotel by Best Western San Diego Pacific Beach

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,319 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is ฿1,961
฿2,254 total
includes taxes & fees
25 Mar - 26 Mar
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,182 reviews)
"The room was spotless and the staff were very helpful and welcoming would definitely stay here again "
United States
Raul
The price is ฿3,133
฿3,602 total
includes taxes & fees
22 Mar - 23 Mar
Wyndham Garden San Diego Near SeaWorld

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.6 out of 10, (2,099 reviews)
"Yes my dog was comfortable. Yes the shuttle was very convenient. Room was clean staff friendly. Will recommend to family and friends "
United States
Losi
The price is ฿2,237
฿2,571 total
includes taxes & fees
17 Mar - 18 Mar
E-Z 8 Motel Old Town

Pacific Terrace Hotel

Pacific Terrace Hotel
4.0 star property
North Pacific Beach, 3.8 km from Mission Bay
9.8 out of 10, Exceptional, (1,003 reviews)
"We enjoyed our stay. The staff was courteous and helpful. Location was perfect. I highly recommend this hotel. My husband and I will return. "
United States
James
The price is ฿10,070
฿11,576 total
includes taxes & fees
13 Apr - 14 Apr
Pacific Terrace Hotel

Tower23 Hotel

Tower23 Hotel
4.0 star property
North Pacific Beach, 3.6 km from Mission Bay
9.6 out of 10, Exceptional, (1,000 reviews)
"Staff was great. Rooms were spotless. "
United States
Sloan
The price is ฿10,910
฿12,322 total
includes taxes & fees
12 Apr - 13 Apr
Tower23 Hotel

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.2 km from Mission Bay
9.6 out of 10, Exceptional, (441 reviews)
"Clean rooms, decent staff, decent breakfast, good location"
United States
Minhaz
Samesun Ocean Beach - Hostel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 49 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 49 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Junipero Serra Museum or Whaley House Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.