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Our top choices for Mission Bay hotels

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (207 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
The price is ฿2,930
฿3,304 total
includes taxes & fees
5 May - 6 May
ITH Mission Beach Backpacker Hostel

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,227 reviews)
"Dog friendly and excellent location. "
United States
Michael
The price is ฿6,015
฿7,665 total
includes taxes & fees
12 Apr - 13 Apr
The Dana on Mission Bay

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (331 reviews)
"Beautiful area with great food nearby and wonderful amenities. "
United States
Alicia
The price is ฿5,339
฿6,020 total
includes taxes & fees
7 Apr - 8 Apr
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,517 reviews)
"Great property with great food and lots to do. "
United States
GERALD
The price is ฿6,801
฿9,547 total
includes taxes & fees
12 Apr - 13 Apr
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,760 reviews)
"An amazing location and super friendly staff."
United States
Michael
The price is ฿9,388
฿10,791 total
includes taxes & fees
26 Apr - 27 Apr
The Wayfarer San Diego

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,006 reviews)
"Beautiful beach property a bit noisy with a lot of college kids about at night but otherwise great place "
United States
Kellene
The price is ฿5,344
฿6,143 total
includes taxes & fees
13 Apr - 14 Apr
The Beach Cottages

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,393 reviews)
"The restaurant on site was delicious "
United States
Blanca
The price is ฿6,832
฿9,582 total
includes taxes & fees
12 Apr - 13 Apr
San Diego Mission Bay Resort

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (797 reviews)
"Excellence breakfast and near to downtown with best rates and wonderful supporting staff and cleanliness."
United States
Apinder
The price is ฿5,524
฿6,350 total
includes taxes & fees
7 Apr - 8 Apr
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,969 reviews)
"We stay here a few times a year normally and love the location. "
United States
Lindsay
The price is ฿6,149
฿8,884 total
includes taxes & fees
12 Apr - 13 Apr
Bahia Resort Hotel

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,011 reviews)
"Great breakfast buffet!"
United States
Anthony
The price is ฿5,263
฿6,049 total
includes taxes & fees
27 Apr - 28 Apr
Holiday Inn Express San Diego - SeaWorld Area by IHG

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,603 reviews)
"Beautiful hotel, friendly staff, very clean, lots to do, RedMarlin was great for breakfast. "
United States
Hanna
The price is ฿6,505
฿9,207 total
includes taxes & fees
19 Apr - 20 Apr
Hyatt Regency Mission Bay Spa and Marina

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (872 reviews)
"Good breakfast, easy parking and clean room."
United States
Anina
The price is ฿4,674
฿5,373 total
includes taxes & fees
26 Apr - 27 Apr
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,555 reviews)
"Breakfast buffet was exceptional."
United States
Catherine
The price is ฿3,473
฿3,992 total
includes taxes & fees
28 Apr - 29 Apr
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (335 reviews)
"Nice staff and good breakfast."
United States
Carol
The price is ฿3,423
฿3,935 total
includes taxes & fees
3 May - 4 May
Best Western San Diego Pacific Beach/Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,005 reviews)
"Rooms very clean and nice 👌 "
United States
Balwin
The price is ฿3,416
฿3,926 total
includes taxes & fees
20 Apr - 21 Apr
GreenTree Inn San Diego Mission Bay

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,213 reviews)
"Overall, we had a great stay. "
United States
Alexis
The price is ฿6,918
฿9,694 total
includes taxes & fees
12 Apr - 13 Apr
Catamaran Resort and Spa

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,242 reviews)
"We enjoyed our stay, will definitely be coming back "
Canada
Melissa
The price is ฿7,224
฿8,159 total
includes taxes & fees
21 Apr - 22 Apr
Surfer Beach Hotel

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,560 reviews)
"Pet friendly "
United States
CARLOS
The price is ฿3,726
฿4,209 total
includes taxes & fees
13 Apr - 14 Apr
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (257 reviews)
"Great location. "
United States
Xihao
The price is ฿4,060
฿4,578 total
includes taxes & fees
13 Apr - 14 Apr
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,361 reviews)
"Great and easy way to check in and out!"
United States
Pedro
The price is ฿2,052
฿2,358 total
includes taxes & fees
7 Apr - 8 Apr
Heritage Inn San Diego
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
207 reviews
View
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,227 reviews
View
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
331 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,517 reviews
View
View from property
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,760 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 51 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 51 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.