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Our top choices for Mission Bay hotels

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,363 reviews)
"NICE PLACE TO STAY"
United States
René
The price is ฿6,480
฿8,384 total
includes taxes & fees
25 May - 26 May
The Dana on Mission Bay

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (214 reviews)
"Staff was great, all areas of the property were clean and I felt safe"
United States
Jessi
The price is ฿4,431
฿4,996 total
includes taxes & fees
27 May - 28 May
ITH Mission Beach Backpacker Hostel

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (368 reviews)
"Great place to stay for a couple and a family, lots of food and shops near by and would definitely stay again, coming back soon!"
United States
John
The price is ฿6,592
฿7,433 total
includes taxes & fees
25 May - 26 May
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,598 reviews)
"Phenomenal stay!! "
United States
Raymond
The price is ฿7,093
฿9,878 total
includes taxes & fees
25 May - 26 May
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,776 reviews)
"Beautiful property and great location."
United States
Michael
The price is ฿8,434
฿9,694 total
includes taxes & fees
2 Jun - 3 Jun
The Wayfarer San Diego

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.6 out of 10, Excellent, (1,443 reviews)
"Perfect place for a family trip "
United States
Krystal
The price is ฿5,444
฿7,980 total
includes taxes & fees
25 May - 26 May
San Diego Mission Bay Resort

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,001 reviews)
"amazing breakfast and a great variety with an amazing morning staff"
United States
alyssa
The price is ฿4,949
฿5,689 total
includes taxes & fees
31 May - 1 Jun
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.8 out of 10, Excellent, (2,083 reviews)
"Great for families, bay view was incredible! "
United States
Anniesse
The price is ฿5,539
฿8,177 total
includes taxes & fees
25 May - 26 May
Bahia Resort Hotel

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (964 reviews)
"clean room; friendly staff; great amenities"
United States
Joseph
The price is ฿4,769
฿5,482 total
includes taxes & fees
28 May - 29 May
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,648 reviews)
"The only place I will stay at in San diego! Clean hotel, great amenities, wonderful staff."
United States
Hanna
The price is ฿6,154
฿8,797 total
includes taxes & fees
25 May - 26 May
Hyatt Regency Mission Bay Spa and Marina

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (891 reviews)
"Great service from start to finish and very clean hotel "
United States
Jesus
The price is ฿3,842
฿4,417 total
includes taxes & fees
28 May - 29 May
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,255 reviews)
"Beautiful hotel grounds"
United States
Stephanie
The price is ฿5,785
฿8,386 total
includes taxes & fees
25 May - 26 May
Catamaran Resort and Spa

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,686 reviews)
"Room is clean, staff are especially helpful and courteous, breakfast was great…all in all made my stay comfortable and convenient because just minutes away from the airport…would stay here again"
United States
Parley Vinn Anastacius
The price is ฿3,403
฿3,911 total
includes taxes & fees
25 May - 26 May
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (393 reviews)
"The rooms were great, i love the bed and the pillows, parking was easy and so was checkin"
United States
Bernadette
The price is ฿2,837
฿3,261 total
includes taxes & fees
28 May - 29 May
Best Western San Diego Pacific Beach/Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,285 reviews)
"Staff was helpful! Love staying here !"
United States
Jonathan
The price is ฿6,773
฿7,650 total
includes taxes & fees
25 May - 26 May
Surfer Beach Hotel

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,118 reviews)
"Great experience, will stay here again"
United States
Victoria
The price is ฿3,487
฿4,009 total
includes taxes & fees
25 May - 26 May
GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,559 reviews)
"Nice room clean good breakfast"
United States
Michael
The price is ฿3,009
฿3,398 total
includes taxes & fees
26 May - 27 May
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (259 reviews)
"Great location. "
United States
Xihao
The price is ฿1,981
฿2,234 total
includes taxes & fees
10 Jun - 11 Jun
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,460 reviews)
"I really like the hotel Was close to sea world and lots of eating places with in walking distance."
United States
Latrice
The price is ฿2,300
฿2,644 total
includes taxes & fees
26 May - 27 May
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,226 reviews)
"Nice stay, clean room"
United States
Luis
The price is ฿3,062
฿3,520 total
includes taxes & fees
28 May - 29 May
Wyndham Garden San Diego Near SeaWorld
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,363 reviews
View
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
214 reviews
View
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
368 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,598 reviews
View
Outdoor pool, a heated pool
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,776 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 44 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 44 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, San Diego Black Ensemble Theater and Cygnet Theater Company.