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Check prices for these dates

Tonight
24 Mar - 25 Mar
Tomorrow
25 Mar - 26 Mar
This weekend
27 Mar - 29 Mar
Next weekend
3 Apr - 5 Apr

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Our top choices for Mission Bay hotels

Exterior

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (326 reviews)
"Excellent location, great and helpful staff and super cute room! We'd stay here again for sure!"
United States
Charissa
The price is ฿6,477
฿7,303 total
includes taxes & fees
25 Mar - 26 Mar
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
Living area

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (207 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
ITH Mission Beach Backpacker Hostel
2 outdoor pools, a heated pool, pool loungers

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,194 reviews)
"Clean room, staff was friendly, overall great place to stay. "
United States
Amber
The price is ฿5,961
฿7,597 total
includes taxes & fees
12 Apr - 13 Apr
The Dana on Mission Bay
5 outdoor pools, a heated pool, pool umbrellas, pool loungers

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,471 reviews)
"Great family place to stay. "
United States
Vera
The price is ฿7,781
฿10,684 total
includes taxes & fees
5 Apr - 6 Apr
Paradise Point Resort & Spa
View from property

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,756 reviews)
"An amazing location and super friendly staff."
United States
Michael
The price is ฿8,030
฿9,230 total
includes taxes & fees
12 Apr - 13 Apr
The Wayfarer San Diego
Reception

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (750 reviews)
"Breakfast area was very nice"
United States
Heidi
The price is ฿5,114
฿5,878 total
includes taxes & fees
5 Apr - 6 Apr
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
On the beach

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,000 reviews)
"Room was great, very clean. Front desk was super helpful and kind. Great location and would recommend to anyone staying in Pacific beach. "
United States
Hailey
The price is ฿5,662
฿6,508 total
includes taxes & fees
5 Apr - 6 Apr
The Beach Cottages
Exterior

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,003 reviews)
"Great location and friendly staff. Just as described. Very happy with our stay."
United States
Bruna
The price is ฿5,592
฿6,427 total
includes taxes & fees
5 Apr - 6 Apr
Holiday Inn Express San Diego - SeaWorld Area by IHG
Outdoor pool, open 7:00 AM to 10:00 PM, pool cabanas (surcharge)

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,385 reviews)
"Nice place and conveniently close to attractions and good restaurants."
United States
Joel
The price is ฿7,861
฿10,775 total
includes taxes & fees
5 Apr - 6 Apr
San Diego Mission Bay Resort
Breakfast, lunch, dinner served; Mediterranean cuisine

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,932 reviews)
"The resort was great. "
United States
Clifford
The price is ฿6,972
฿9,813 total
includes taxes & fees
22 Apr - 23 Apr
Bahia Resort Hotel
3 outdoor pools, pool cabanas (surcharge), pool umbrellas

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,607 reviews)
"clean rooms, beds were comfortable, pools were good, breakfast place was very nice."
United States
sandeep
The price is ฿6,907
฿9,680 total
includes taxes & fees
5 Apr - 6 Apr
Hyatt Regency Mission Bay Spa and Marina
Lobby

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,511 reviews)
"It was very clean and comfortable would stay again "
United States
Amparo
The price is ฿3,442
฿3,957 total
includes taxes & fees
14 Apr - 15 Apr
Comfort Inn Sea World Area
Lobby

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.2 out of 10, Very good, (315 reviews)
"Nice staff and good breakfast."
United States
Carol
The price is ฿3,140
฿3,609 total
includes taxes & fees
5 Apr - 6 Apr
Best Western San Diego Pacific Beach/Mission Bay
Lobby sitting area

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,983 reviews)
"Great stay"
United States
Lizeth
The price is ฿3,385
฿3,891 total
includes taxes & fees
30 Mar - 31 Mar
GreenTree Inn San Diego Mission Bay
Fishing

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,230 reviews)
"Clean room, very kind staff, beautiful view! "
United States
Michelle
The price is ฿7,711
฿8,709 total
includes taxes & fees
21 Apr - 22 Apr
Surfer Beach Hotel
Desk, laptop workspace, blackout curtains, iron/ironing board

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,565 reviews)
"Yes only thing the room was clean one time in our five nights ther"
United States
Angel
The price is ฿3,421
฿3,864 total
includes taxes & fees
30 Mar - 31 Mar
SureStay Hotel by Best Western San Diego Pacific Beach
Property entrance

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,201 reviews)
"Location was nice and the beach being right there was great!"
United States
Brenda
The price is ฿8,234
฿11,189 total
includes taxes & fees
19 Apr - 20 Apr
Catamaran Resort and Spa
Sun deck

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (257 reviews)
"Great location. "
United States
Xihao
The price is ฿4,059
฿4,576 total
includes taxes & fees
25 Mar - 26 Mar
ITH Beach Bungalow Surf Hostel
Outdoor pool

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,337 reviews)
"We had a great stay at heritage inn, room was clean and tidy and location was great for our stay. "
Canada
calvin
The price is ฿2,045
฿2,350 total
includes taxes & fees
30 Mar - 31 Mar
Heritage Inn San Diego
Lobby sitting area

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,190 reviews)
"The room was spotless and the staff were very helpful and welcoming would definitely stay here again "
United States
Raul
The price is ฿3,762
฿4,324 total
includes taxes & fees
25 Mar - 26 Mar
Wyndham Garden San Diego Near SeaWorld
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
326 reviews
View
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
207 reviews
View
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,194 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,471 reviews
View
View from property
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,756 reviews
View

Top Mission Bay Hotel Reviews

Heritage Inn San Diego

Heritage Inn San Diego

10/10 Excellent
"Clean , very convenient to near by stores n places to eat , highly recommend "
Celina 2-night trip
Posted 3 hours ago
Heritage Inn San Diego

Hotels near other Mission Bay attractions

Mission Bay Park

4.4/5 (165 reviews)
Mission Bay Park is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Discover the beautiful sunsets in this walkable area or enjoy its surfing spots.
See properties

Ski Beach

Why not spend a lazy afternoon at Ski Beach during your trip to San Diego?
See properties

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 52 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 52 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Junipero Serra Museum or Whaley House Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.