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Our top choices for Mission Bay hotels

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (210 reviews)
"This was the best! I loved staying here. Friday night burgers and pancake breakfast. It beat every hotel easily and to add to it, the volunteers were so hospitable. I really connected with them all. It felt like a distant family reunion."
United States
Paul
The price is ฿3,756
฿4,235 total
includes taxes & fees
10 May - 11 May
ITH Mission Beach Backpacker Hostel

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (2,059 reviews)
"Nice place to stay with the kids."
United States
Paul
The price is ฿5,639
฿8,272 total
includes taxes & fees
20 May - 21 May
Bahia Resort Hotel

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (909 reviews)
"The hotel was super clean and close to a lot of good food places!"
United States
Buna
The price is ฿4,813
฿5,532 total
includes taxes & fees
12 May - 13 May
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (887 reviews)
"Good breakfast, easy parking and clean room."
United States
Anina
The price is ฿4,508
฿5,182 total
includes taxes & fees
26 May - 27 May
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,244 reviews)
"Food at the restaurants was excellent. Wonderful and friendly staff as well."
United States
Mary
The price is ฿5,994
฿8,607 total
includes taxes & fees
10 May - 11 May
Catamaran Resort and Spa

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,648 reviews)
"Will stay again"
United States
Louis
The price is ฿3,378
฿3,882 total
includes taxes & fees
11 May - 12 May
Comfort Inn Sea World Area

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,077 reviews)
"Staff was friendly and the hotel had good parking and clean rooms"
United States
Levi
The price is ฿3,377
฿3,882 total
includes taxes & fees
13 May - 14 May
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,284 reviews)
"The hotel was in great location and the staff was super nice! "
United States
Heidi
The price is ฿6,077
฿6,863 total
includes taxes & fees
11 May - 12 May
Surfer Beach Hotel

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,577 reviews)
"Nice room clean good breakfast"
United States
Michael
The price is ฿2,975
฿3,360 total
includes taxes & fees
12 May - 13 May
SureStay Hotel by Best Western San Diego Pacific Beach

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,437 reviews)
"It's perfect for spending the night when you have an early flight—super close to the San Diego airport. The rooms are clean and nice."
United States
areli
The price is ฿2,109
฿2,424 total
includes taxes & fees
10 May - 11 May
Heritage Inn San Diego

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (259 reviews)
"Great location. "
United States
Xihao
The price is ฿2,072
฿2,336 total
includes taxes & fees
9 Jun - 10 Jun
ITH Beach Bungalow Surf Hostel

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,235 reviews)
"Great overall stay. Would stay again. "
United States
German
The price is ฿2,866
฿3,294 total
includes taxes & fees
11 May - 12 May
Wyndham Garden San Diego Near SeaWorld

Mission Bay Motel

Mission Bay Motel
Pacific Beach, 3 km from Mission Bay
7.6 out of 10, Good, (13 reviews)
"Great location—literally just a block from the beach! The property was clean, comfortable, and within walking distance to everything we needed. Staying here made our time in San Diego even better, especially since it was so reasonably priced. Would definitely recommend! "
United States
Victoria
The price is ฿3,220
฿3,631 total
includes taxes & fees
10 May - 11 May
Mission Bay Motel

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.6 out of 10, (2,126 reviews)
"Great place "
United States
Ashley
The price is ฿1,998
฿2,297 total
includes taxes & fees
11 May - 12 May
E-Z 8 Motel Old Town

Ocean Park Inn

Ocean Park Inn
3.0 star property
Pacific Beach, 3.3 km from Mission Bay
9.4 out of 10, Exceptional, (1,015 reviews)
"Great hotel in an even better location! Lots to do in the area and your right on the beach! Staff were very helpful as well."
Canada
Justin
The price is ฿7,534
฿8,660 total
includes taxes & fees
19 May - 20 May
Ocean Park Inn

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.2 km from Mission Bay
9.6 out of 10, Exceptional, (490 reviews)
"Excellent stay, clean and nice people!"
United States
Christine
The price is ฿2,017
฿2,278 total
includes taxes & fees
13 May - 14 May
Samesun Ocean Beach - Hostel

Old Town Inn

Old Town Inn
2.5 star property
3.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,872 reviews)
"Breakfast was decent for the price you pay per stay."
United States
Celia
The price is ฿5,007
฿5,746 total
includes taxes & fees
4 Jun - 5 Jun
Old Town Inn

Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.5 km from Mission Bay
8.8 out of 10, Excellent, (1,433 reviews)
"Very nice stay, would love to stay there again"
United States
Erika
The price is ฿4,176
฿4,800 total
includes taxes & fees
26 May - 27 May
Hilton Garden Inn San Diego Old Town/SeaWorld Area

Ocean Beach Hotel

Ocean Beach Hotel
3.0 star property
Ocean Beach, 4.1 km from Mission Bay
8.8 out of 10, Excellent, (1,343 reviews)
"Great location!"
United States
Paul
The price is ฿5,817
฿6,558 total
includes taxes & fees
10 May - 11 May
Ocean Beach Hotel

California Dreams Hostel - Ocean Beach

California Dreams Hostel - Ocean Beach
2.0 star property
Point Loma Heights, 4.2 km from Mission Bay
8.8 out of 10, Excellent, (214 reviews)
"I just needed a place to sleep for one night, nothing fancy. And for the price this total fit the bill! "
United States
Henry
The price is ฿2,869
฿3,235 total
includes taxes & fees
11 May - 12 May
California Dreams Hostel - Ocean Beach
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
210 reviews
View
Breakfast, lunch, dinner served; Mediterranean cuisine
Bahia Resort Hotel
3.5 star property
8.6
Excellent
2,059 reviews
View
Studio Suite, 1 King Bed, Courtyard View | View from room
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
9.2
Wonderful
909 reviews
View
Free continental breakfast
Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
8.8
Excellent
887 reviews
View
Property entrance
Catamaran Resort and Spa
4.0 star property
8.6
Excellent
1,244 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 47 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 47 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.