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Check prices for these dates

Tonight
13 Feb - 14 Feb
Tomorrow
14 Feb - 15 Feb
This weekend
13 Feb - 15 Feb
Next weekend
20 Feb - 22 Feb

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Our top choices for Mission Bay hotels

Living area

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (204 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
ITH Mission Beach Backpacker Hostel
2 outdoor pools, a heated pool, pool loungers

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,079 reviews)
"Great location and grounds!"
United States
Ethan
The price is ฿5,253
฿6,752 total
includes taxes & fees
22 Feb - 23 Feb
The Dana on Mission Bay
View from property

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,737 reviews)
"rooms were very nice staff was helpful location was excellent"
United States
Michele
The price is ฿6,050
฿6,954 total
includes taxes & fees
24 Feb - 25 Feb
The Wayfarer San Diego
5 outdoor pools, a heated pool, pool umbrellas, pool loungers

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.6 out of 10, Excellent, (2,412 reviews)
"Clean Rooms, staff very friendly, very relaxing place "
United States
AlmaDelia
The price is ฿4,849
฿7,218 total
includes taxes & fees
1 Mar - 2 Mar
Paradise Point Resort & Spa
Reception

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (619 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is ฿3,936
฿4,525 total
includes taxes & fees
25 Feb - 26 Feb
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
Free continental breakfast

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
9.0 out of 10, Wonderful, (852 reviews)
"Excellent hotel and really nice breakfast"
United States
Luke
The price is ฿4,227
฿4,859 total
includes taxes & fees
1 Mar - 2 Mar
Fairfield Inn & Suites by Marriott San Diego Pacific Beach
Exterior

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,001 reviews)
"very spacious room very clean close to everything restaurant stores Central located."
United States
Walter
The price is ฿4,196
฿4,823 total
includes taxes & fees
22 Feb - 23 Feb
Holiday Inn Express San Diego - SeaWorld Area by IHG
Outdoor pool, open 7:00 AM to 10:00 PM, pool cabanas (surcharge)

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,347 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is ฿6,185
฿8,753 total
includes taxes & fees
1 Mar - 2 Mar
San Diego Mission Bay Resort
Breakfast, lunch, dinner served; Mediterranean cuisine

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,878 reviews)
"Amazing place "
United States
Richard
The price is ฿4,729
฿7,165 total
includes taxes & fees
1 Mar - 2 Mar
Bahia Resort Hotel
3 outdoor pools, pool cabanas (surcharge), pool umbrellas

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,598 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is ฿4,943
฿7,327 total
includes taxes & fees
26 Feb - 27 Feb
Hyatt Regency Mission Bay Spa and Marina
Combined shower/bathtub, free toiletries, hair dryer, towels

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.4 out of 10, Very good, (268 reviews)
"Clean hotel & great location. "
United States
yardley
The price is ฿2,615
฿3,006 total
includes taxes & fees
22 Feb - 23 Feb
Best Western San Diego Pacific Beach/Mission Bay
Property amenity

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,150 reviews)
"Location! "
United States
Jennifer
The price is ฿5,522
฿8,005 total
includes taxes & fees
16 Feb - 17 Feb
Catamaran Resort and Spa
Lobby

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,359 reviews)
"Nice beds and breakfast, really convenient "
Canada
Margarita
The price is ฿2,906
฿3,340 total
includes taxes & fees
22 Feb - 23 Feb
Comfort Inn Sea World Area
Lobby sitting area

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,929 reviews)
"Great stay"
United States
Lizeth
The price is ฿2,744
฿3,154 total
includes taxes & fees
22 Feb - 23 Feb
GreenTree Inn San Diego Mission Bay
Fishing

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,201 reviews)
"Room was clean, staff was great, great location, will definitely stay there again.."
United States
Kimberly
The price is ฿5,532
฿6,249 total
includes taxes & fees
25 Feb - 26 Feb
Surfer Beach Hotel
Free breakfast

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,523 reviews)
"Room was nice, clean, staff was friendly, "
United States
philip
The price is ฿2,598
฿2,934 total
includes taxes & fees
22 Feb - 23 Feb
SureStay Hotel by Best Western San Diego Pacific Beach
Sun deck

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (255 reviews)
"Ocean view couldnt be better Why i picked this Not normally a hostel woman"
United States
Vickie
The price is ฿3,457
฿3,898 total
includes taxes & fees
22 Feb - 23 Feb
ITH Beach Bungalow Surf Hostel
Outdoor pool

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,245 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is ฿1,958
฿2,251 total
includes taxes & fees
3 Mar - 4 Mar
Heritage Inn San Diego
Lobby sitting area

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,149 reviews)
"Good location friendly staff"
United States
Anya
The price is ฿2,628
฿3,021 total
includes taxes & fees
22 Feb - 23 Feb
Wyndham Garden San Diego Near SeaWorld
Lobby

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.4 out of 10, (2,105 reviews)
"Better than last time"
United States
benjamin
The price is ฿2,026
฿2,328 total
includes taxes & fees
23 Feb - 24 Feb
E-Z 8 Motel Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
204 reviews
View
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,079 reviews
View
View from property
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,737 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.6
Excellent
2,412 reviews
View
Reception
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
9.2
Wonderful
619 reviews
View

Top Mission Bay Hotel Reviews

The Wayfarer San Diego

The Wayfarer San Diego

10/10 Excellent
"The room was perfect. After a very long day of travel, our VRBO Host cancelled our reservation at the last moment. An agent found a comfy room at The Wayfarer. The night host, Blaze and security guard Rick went out of their way to make us feel welcome and took excellent care of us! Our daughter lives in San Diego,so we have often walked past the wall murals at your place...imagine after a tough day yesterday - waking up in a comfy bed, making a cup of coffee, and sitting on the balcony to look at the beautiful mural and ocean....I can not say enough for the kindness we received from your staff! We WILL definitely be back!"
William 1-night trip
Posted 1 day ago
The Wayfarer San Diego

Hotels near other Mission Bay attractions

Mission Bay Park

4.4/5 (165 reviews)
Mission Bay Park is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Discover the beautiful sunsets in this walkable area or enjoy its surfing spots.
See properties

Ski Beach

Why not spend a lazy afternoon at Ski Beach during your trip to San Diego?
See properties

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 45 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 45 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Junipero Serra Museum or Whaley House Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.