Search Hotels Near Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (207 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
ITH Mission Beach Backpacker Hostel

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (315 reviews)
"Excellent location, great and helpful staff and super cute room! We'd stay here again for sure!"
United States
Charissa
The price is ฿7,834
฿8,833 total
includes taxes & fees
23 Mar - 24 Mar
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,152 reviews)
"clean room, great location, friendly staff, beautiful grounds"
United States
Rebecca
The price is ฿5,457
฿7,015 total
includes taxes & fees
5 Apr - 6 Apr
The Dana on Mission Bay

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,452 reviews)
"Clean rooms and well maintained resort."
United States
Derek
The price is ฿6,411
฿9,078 total
includes taxes & fees
5 Apr - 6 Apr
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,751 reviews)
"Rooms were clean, pool was great, right next to the beach, will definitely stay again!"
United States
Emma
The price is ฿9,274
฿10,660 total
includes taxes & fees
12 Apr - 13 Apr
The Wayfarer San Diego

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (728 reviews)
"Breakfast area was very nice"
United States
Heidi
The price is ฿5,318
฿6,112 total
includes taxes & fees
5 Apr - 6 Apr
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,003 reviews)
"Good location with friendly staff"
United States
Frank
The price is ฿5,643
฿6,487 total
includes taxes & fees
5 Apr - 6 Apr
The Beach Cottages

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,372 reviews)
"Clean room, excellent friendly staff, comfortable beds"
Canada
Shauna
The price is ฿7,718
฿10,579 total
includes taxes & fees
5 Apr - 6 Apr
San Diego Mission Bay Resort

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,005 reviews)
"My friend and I enjoyed our stay. The beds were very comfy and the room was nice and clean. Also I have to say the breakfast was really good! "
United States
Brooke
The price is ฿5,683
฿6,533 total
includes taxes & fees
5 Apr - 6 Apr
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,915 reviews)
"Wonderful property, great staff, easy access to the area, such a beautiful stay"
United States
David
The price is ฿5,399
฿8,001 total
includes taxes & fees
15 Apr - 16 Apr
Bahia Resort Hotel

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (863 reviews)
"Excellent hotel and really nice breakfast"
United States
Luke
The price is ฿4,198
฿4,825 total
includes taxes & fees
5 Apr - 6 Apr
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,606 reviews)
"Great ocean view!"
United States
Louis
The price is ฿7,136
฿9,911 total
includes taxes & fees
13 Apr - 14 Apr
Hyatt Regency Mission Bay Spa and Marina

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,479 reviews)
"It was very clean and comfortable would stay again "
United States
Amparo
The price is ฿3,294
฿3,786 total
includes taxes & fees
5 Apr - 6 Apr
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (299 reviews)
"Nice staff and good breakfast."
United States
Carol
The price is ฿3,901
฿4,484 total
includes taxes & fees
5 Apr - 6 Apr
Best Western San Diego Pacific Beach/Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,968 reviews)
"Great stay"
United States
Lizeth
The price is ฿3,374
฿3,878 total
includes taxes & fees
19 Mar - 20 Mar
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,222 reviews)
"Clean room, very kind staff, beautiful view! "
United States
Michelle
The price is ฿6,717
฿7,586 total
includes taxes & fees
14 Apr - 15 Apr
Surfer Beach Hotel

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,188 reviews)
"Location was nice and the beach being right there was great!"
United States
Brenda
The price is ฿8,499
฿11,487 total
includes taxes & fees
13 Apr - 14 Apr
Catamaran Resort and Spa

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,552 reviews)
"Room was nice, clean, staff was friendly, "
United States
philip
The price is ฿3,410
฿3,851 total
includes taxes & fees
5 Apr - 6 Apr
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (256 reviews)
"Great location. "
United States
Xihao
The price is ฿4,144
฿4,673 total
includes taxes & fees
23 Mar - 24 Mar
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,323 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is ฿1,982
฿2,279 total
includes taxes & fees
25 Mar - 26 Mar
Heritage Inn San Diego
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 49 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 49 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, McCoy Museum House or Whaley House Museum. Casa de Machado y Stewart, Casa de Estudillo and Mason Street School are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.