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Our top choices for Mission Bay hotels

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,206 reviews)
"Dog friendly and excellent location. "
United States
Michael
The price is ฿6,054
฿7,715 total
includes taxes & fees
5 Apr - 6 Apr
The Dana on Mission Bay

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (207 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
The price is ฿3,731
฿4,207 total
includes taxes & fees
12 Apr - 13 Apr
ITH Mission Beach Backpacker Hostel

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,756 reviews)
"An amazing location and super friendly staff."
United States
Michael
The price is ฿9,449
฿10,862 total
includes taxes & fees
12 Apr - 13 Apr
The Wayfarer San Diego

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.6 out of 10, Excellent, (2,485 reviews)
"Great family place to stay. "
United States
Vera
The price is ฿7,971
฿10,903 total
includes taxes & fees
26 Apr - 27 Apr
Paradise Point Resort & Spa

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (771 reviews)
"Friendly desk staff, great breakfast and clean room. "
United States
Catherine
The price is ฿5,418
฿6,228 total
includes taxes & fees
6 Apr - 7 Apr
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,002 reviews)
"Beautiful beach property a bit noisy with a lot of college kids about at night but otherwise great place "
United States
Kellene
The price is ฿5,750
฿6,609 total
includes taxes & fees
6 Apr - 7 Apr
The Beach Cottages

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,002 reviews)
"Great breakfast buffet!"
United States
Anthony
The price is ฿5,297
฿6,089 total
includes taxes & fees
12 Apr - 13 Apr
Holiday Inn Express San Diego - SeaWorld Area by IHG

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,386 reviews)
"Nice place and conveniently close to attractions and good restaurants."
United States
Joel
The price is ฿8,193
฿11,157 total
includes taxes & fees
12 Apr - 13 Apr
San Diego Mission Bay Resort

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,943 reviews)
"We stay here a few times a year normally and love the location. "
United States
Lindsay
The price is ฿7,523
฿10,473 total
includes taxes & fees
12 Apr - 13 Apr
Bahia Resort Hotel

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (868 reviews)
"Good breakfast, easy parking and clean room."
United States
Anina
The price is ฿4,573
฿5,257 total
includes taxes & fees
5 Apr - 6 Apr
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,607 reviews)
"Beautiful hotel, friendly staff, very clean, lots to do, RedMarlin was great for breakfast. "
United States
Hanna
The price is ฿6,548
฿9,267 total
includes taxes & fees
26 Apr - 27 Apr
Hyatt Regency Mission Bay Spa and Marina

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,524 reviews)
"Breakfast buffet was exceptional."
United States
Catherine
The price is ฿3,356
฿3,858 total
includes taxes & fees
26 Apr - 27 Apr
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (318 reviews)
"Nice staff and good breakfast."
United States
Carol
The price is ฿3,301
฿3,794 total
includes taxes & fees
5 Apr - 6 Apr
Best Western San Diego Pacific Beach/Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,992 reviews)
"Great stay"
United States
Lizeth
The price is ฿3,438
฿3,952 total
includes taxes & fees
2 Apr - 3 Apr
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,235 reviews)
"Great staff clean rooms "
United States
Cody
The price is ฿7,469
฿8,435 total
includes taxes & fees
28 Apr - 29 Apr
Surfer Beach Hotel

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,203 reviews)
"Overall, we had a great stay. "
United States
Alexis
The price is ฿7,607
฿10,496 total
includes taxes & fees
27 Apr - 28 Apr
Catamaran Resort and Spa

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,561 reviews)
"Pet friendly "
United States
CARLOS
The price is ฿3,446
฿3,892 total
includes taxes & fees
5 Apr - 6 Apr
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (257 reviews)
"Great location. "
United States
Xihao
The price is ฿4,762
฿5,369 total
includes taxes & fees
13 Apr - 14 Apr
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,347 reviews)
"Great and easy way to check in and out!"
United States
Pedro
The price is ฿2,175
฿2,500 total
includes taxes & fees
13 Apr - 14 Apr
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,188 reviews)
"Nice friendly staff"
Canada
Wayne
The price is ฿3,524
฿4,051 total
includes taxes & fees
5 Apr - 6 Apr
Wyndham Garden San Diego Near SeaWorld
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,206 reviews
View
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
207 reviews
View
View from property
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,756 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.6
Excellent
2,485 reviews
View
Lobby sitting area
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
9.2
Wonderful
771 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 52 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 52 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Junipero Serra Museum or Whaley House Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.