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Our top choices for Mission Bay hotels

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,096 reviews)
"Great location and grounds!"
United States
Ethan
The price is ฿5,103
฿6,581 total
includes taxes & fees
22 Feb - 23 Feb
The Dana on Mission Bay

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (206 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
ITH Mission Beach Backpacker Hostel

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (301 reviews)
"Great place to stay when you are in San Diego! Total beach vibes. Super clean and easy to check in. Definitely will be booking there again! "
United States
Carla
The price is ฿6,479
฿7,305 total
includes taxes & fees
19 Feb - 20 Feb
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,738 reviews)
"rooms were very nice staff was helpful location was excellent"
United States
Michele
The price is ฿6,586
฿7,570 total
includes taxes & fees
19 Feb - 20 Feb
The Wayfarer San Diego

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.6 out of 10, Excellent, (2,423 reviews)
"Clean Rooms, staff very friendly, very relaxing place "
United States
AlmaDelia
The price is ฿4,854
฿7,227 total
includes taxes & fees
1 Mar - 2 Mar
Paradise Point Resort & Spa

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (638 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is ฿3,965
฿4,557 total
includes taxes & fees
8 Mar - 9 Mar
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
9.0 out of 10, Wonderful, (855 reviews)
"Excellent hotel and really nice breakfast"
United States
Luke
The price is ฿4,076
฿4,686 total
includes taxes & fees
22 Feb - 23 Feb
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,000 reviews)
"Good location with friendly staff"
United States
Frank
The price is ฿5,087
฿5,848 total
includes taxes & fees
19 Feb - 20 Feb
The Beach Cottages

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,001 reviews)
"very spacious room very clean close to everything restaurant stores Central located."
United States
Walter
The price is ฿3,709
฿4,264 total
includes taxes & fees
22 Feb - 23 Feb
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,883 reviews)
"Amazing place "
United States
Richard
The price is ฿4,999
฿7,477 total
includes taxes & fees
22 Feb - 23 Feb
Bahia Resort Hotel

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,352 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is ฿6,230
฿8,816 total
includes taxes & fees
1 Mar - 2 Mar
San Diego Mission Bay Resort

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,604 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is ฿4,948
฿7,334 total
includes taxes & fees
26 Feb - 27 Feb
Hyatt Regency Mission Bay Spa and Marina

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.4 out of 10, Very good, (272 reviews)
"Clean hotel & great location. "
United States
yardley
The price is ฿2,883
฿3,314 total
includes taxes & fees
26 Feb - 27 Feb
Best Western San Diego Pacific Beach/Mission Bay

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,379 reviews)
"Nice beds and breakfast, really convenient "
Canada
Margarita
The price is ฿2,927
฿3,365 total
includes taxes & fees
24 Feb - 25 Feb
Comfort Inn Sea World Area

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,945 reviews)
"Great stay"
United States
Lizeth
The price is ฿2,637
฿3,031 total
includes taxes & fees
22 Feb - 23 Feb
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,201 reviews)
"Room was clean, staff was great, great location, will definitely stay there again.."
United States
Kimberly
The price is ฿5,572
฿6,294 total
includes taxes & fees
25 Feb - 26 Feb
Surfer Beach Hotel

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,534 reviews)
"Room was nice, clean, staff was friendly, "
United States
philip
The price is ฿2,755
฿3,111 total
includes taxes & fees
24 Feb - 25 Feb
SureStay Hotel by Best Western San Diego Pacific Beach

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,158 reviews)
"Location! "
United States
Jennifer
The price is ฿5,528
฿8,014 total
includes taxes & fees
22 Feb - 23 Feb
Catamaran Resort and Spa

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,256 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is ฿1,960
฿2,253 total
includes taxes & fees
5 Mar - 6 Mar
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,159 reviews)
"Good location friendly staff"
United States
Anya
The price is ฿2,631
฿3,024 total
includes taxes & fees
24 Feb - 25 Feb
Wyndham Garden San Diego Near SeaWorld
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,096 reviews
View
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
206 reviews
View
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
301 reviews
View
View from property
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,738 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.6
Excellent
2,423 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 43 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 43 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.