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Our top choices for Mission Bay hotels

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (301 reviews)
"Great place to stay when you are in San Diego! Total beach vibes. Super clean and easy to check in. Definitely will be booking there again! "
United States
Carla
The price is ฿7,106
฿8,012 total
includes taxes & fees
2 Mar - 3 Mar
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,742 reviews)
"Beautiful place. "
United States
Roxana
The price is ฿7,369
฿8,470 total
includes taxes & fees
2 Mar - 3 Mar
The Wayfarer San Diego

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,119 reviews)
"Great location and grounds!"
United States
Ethan
The price is ฿5,251
฿6,751 total
includes taxes & fees
2 Mar - 3 Mar
The Dana on Mission Bay

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,429 reviews)
"Clean Rooms, staff very friendly, very relaxing place "
United States
AlmaDelia
The price is ฿4,847
฿7,216 total
includes taxes & fees
1 Mar - 2 Mar
Paradise Point Resort & Spa

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (673 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is ฿4,831
฿5,553 total
includes taxes & fees
1 Mar - 2 Mar
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,001 reviews)
"Good location with friendly staff"
United States
Frank
The price is ฿5,080
฿5,839 total
includes taxes & fees
1 Mar - 2 Mar
The Beach Cottages

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
9.0 out of 10, Wonderful, (859 reviews)
"Excellent hotel and really nice breakfast"
United States
Luke
The price is ฿4,071
฿4,679 total
includes taxes & fees
12 Mar - 13 Mar
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,002 reviews)
"very spacious room very clean close to everything restaurant stores Central located."
United States
Walter
The price is ฿3,704
฿4,257 total
includes taxes & fees
1 Mar - 2 Mar
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,894 reviews)
"Amazing place "
United States
Richard
The price is ฿5,565
฿8,124 total
includes taxes & fees
1 Mar - 2 Mar
Bahia Resort Hotel

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,347 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is ฿6,184
฿8,751 total
includes taxes & fees
1 Mar - 2 Mar
San Diego Mission Bay Resort

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,615 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is ฿5,251
฿7,680 total
includes taxes & fees
1 Mar - 2 Mar
Hyatt Regency Mission Bay Spa and Marina

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.4 out of 10, Very good, (279 reviews)
"Clean hotel & great location. "
United States
yardley
The price is ฿3,033
฿3,486 total
includes taxes & fees
1 Mar - 2 Mar
Best Western San Diego Pacific Beach/Mission Bay

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,411 reviews)
"Nice beds and breakfast, really convenient "
Canada
Margarita
The price is ฿3,039
฿3,493 total
includes taxes & fees
10 Mar - 11 Mar
Comfort Inn Sea World Area

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,211 reviews)
"Room was clean, staff was great, great location, will definitely stay there again.."
United States
Kimberly
The price is ฿6,774
฿7,651 total
includes taxes & fees
2 Mar - 3 Mar
Surfer Beach Hotel

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,950 reviews)
"Great stay"
United States
Lizeth
The price is ฿2,743
฿3,153 total
includes taxes & fees
2 Mar - 3 Mar
GreenTree Inn San Diego Mission Bay

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,165 reviews)
"Location! "
United States
Jennifer
The price is ฿6,577
฿9,215 total
includes taxes & fees
8 Mar - 9 Mar
Catamaran Resort and Spa

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,540 reviews)
"Room was nice, clean, staff was friendly, "
United States
philip
The price is ฿2,873
฿3,244 total
includes taxes & fees
9 Mar - 10 Mar
SureStay Hotel by Best Western San Diego Pacific Beach

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,281 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is ฿1,897
฿2,180 total
includes taxes & fees
8 Mar - 9 Mar
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,159 reviews)
"Good location friendly staff"
United States
Anya
The price is ฿3,218
฿3,698 total
includes taxes & fees
4 Mar - 5 Mar
Wyndham Garden San Diego Near SeaWorld

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.6 out of 10, (2,099 reviews)
"Better than last time"
United States
benjamin
The price is ฿1,801
฿2,070 total
includes taxes & fees
1 Mar - 2 Mar
E-Z 8 Motel Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
301 reviews
View
View from property
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,742 reviews
View
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,119 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,429 reviews
View
Reception
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
9.2
Wonderful
673 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 46 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 46 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.