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Our top choices for Mission Bay hotels

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (363 reviews)
"Great place to stay for a couple and a family, lots of food and shops near by and would definitely stay again, coming back soon!"
United States
John
The price is ฿7,324
฿8,258 total
includes taxes & fees
3 Jun - 4 Jun
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,340 reviews)
"It is a beautiful place to stay."
United States
Dorothy
The price is ฿6,432
฿8,322 total
includes taxes & fees
17 May - 18 May
The Dana on Mission Bay

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,580 reviews)
"Phenomenal stay!! "
United States
Raymond
The price is ฿7,032
฿9,793 total
includes taxes & fees
25 May - 26 May
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,764 reviews)
"Great location cute little beach hotel "
United States
Timothy
The price is ฿7,096
฿8,157 total
includes taxes & fees
20 May - 21 May
The Wayfarer San Diego

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.6 out of 10, Excellent, (1,438 reviews)
"Perfect place for a family trip "
United States
Krystal
The price is ฿6,432
฿9,103 total
includes taxes & fees
17 May - 18 May
San Diego Mission Bay Resort

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,002 reviews)
"amazing breakfast and a great variety with an amazing morning staff"
United States
alyssa
The price is ฿4,921
฿5,656 total
includes taxes & fees
17 May - 18 May
Holiday Inn Express San Diego - SeaWorld Area by IHG

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (934 reviews)
"The hotel was super clean and close to a lot of good food places!"
United States
Buna
The price is ฿4,728
฿5,435 total
includes taxes & fees
28 May - 29 May
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (2,068 reviews)
"Nice place to stay with the kids."
United States
Paul
The price is ฿5,789
฿8,451 total
includes taxes & fees
17 May - 18 May
Bahia Resort Hotel

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (888 reviews)
"Great service from start to finish and very clean hotel "
United States
Jesus
The price is ฿3,814
฿4,384 total
includes taxes & fees
25 May - 26 May
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,637 reviews)
"This property is simply amazing, from the ambiance, to the amenities, and the staff…just terrific. The heated pool and the poolside restaurant are great."
United States
Carolina
The price is ฿6,335
฿8,992 total
includes taxes & fees
20 May - 21 May
Hyatt Regency Mission Bay Spa and Marina

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,661 reviews)
"Room is clean, staff are especially helpful and courteous, breakfast was great…all in all made my stay comfortable and convenient because just minutes away from the airport…would stay here again"
United States
Parley Vinn Anastacius
The price is ฿3,642
฿4,186 total
includes taxes & fees
26 May - 27 May
Comfort Inn Sea World Area

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,250 reviews)
"Food at the restaurants was excellent. Wonderful and friendly staff as well."
United States
Mary
The price is ฿6,852
฿9,601 total
includes taxes & fees
20 May - 21 May
Catamaran Resort and Spa

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (385 reviews)
"The stay was good and close to the zoo and beach also shopping"
United States
Carol
The price is ฿2,816
฿3,237 total
includes taxes & fees
25 May - 26 May
Best Western San Diego Pacific Beach/Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,089 reviews)
"Great experience, will stay here again"
United States
Victoria
The price is ฿3,116
฿3,581 total
includes taxes & fees
19 May - 20 May
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,278 reviews)
"Staff was helpful! Love staying here !"
United States
Jonathan
The price is ฿7,369
฿8,323 total
includes taxes & fees
18 May - 19 May
Surfer Beach Hotel

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,581 reviews)
"Nice room clean good breakfast"
United States
Michael
The price is ฿2,987
฿3,373 total
includes taxes & fees
18 May - 19 May
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (259 reviews)
"Great location. "
United States
Xihao
The price is ฿1,966
฿2,217 total
includes taxes & fees
10 Jun - 11 Jun
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,442 reviews)
"I really like the hotel Was close to sea world and lots of eating places with in walking distance."
United States
Latrice
The price is ฿2,283
฿2,624 total
includes taxes & fees
17 May - 18 May
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,217 reviews)
"Great overall stay. Would stay again. "
United States
German
The price is ฿2,877
฿3,307 total
includes taxes & fees
31 May - 1 Jun
Wyndham Garden San Diego Near SeaWorld

Mission Bay Motel

Mission Bay Motel
Pacific Beach, 3 km from Mission Bay
7.0 out of 10, Good, (17 reviews)
"Great location—literally just a block from the beach! The property was clean, comfortable, and within walking distance to everything we needed. Staying here made our time in San Diego even better, especially since it was so reasonably priced. Would definitely recommend! "
United States
Victoria
The price is ฿2,816
฿3,176 total
includes taxes & fees
19 May - 20 May
Mission Bay Motel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
363 reviews
View
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,340 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,580 reviews
View
Outdoor pool, a heated pool
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,764 reviews
View
Outdoor pool, open 7:00 AM to 10:00 PM, pool cabanas (surcharge)
San Diego Mission Bay Resort
4.0 star property
8.6
Excellent
1,438 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 47 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 47 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.