Photo by Rebecca Friedland

Search Hotels in Mission Bay, San Francisco

Start date: Check-in selected.
To Date
End date: Check-out
  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

LUMA Hotel San Francisco

LUMA Hotel San Francisco
4.0 star property
Mission Bay
9.6 out of 10, Exceptional, (2419)
"Great location, staff was friendly and helpful and the rooms had great amenities with a great view. "
United States
Zach
The price is ฿7,408
฿8,719 total
includes taxes & fees
31 Jan - 1 Feb
LUMA Hotel San Francisco

Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
9.0 out of 10, Wonderful, (7256)
"Great place to stay!"
United States
Isaiah
The price is ฿3,262
฿5,138 total
includes taxes & fees
25 Jan - 26 Jan
Hotel Riu Plaza Fisherman's Wharf

Hilton San Francisco Financial District

Hilton San Francisco Financial District
4.0 star property
Financial District, 3 km from Mission Bay
8.8 out of 10, Excellent, (2239)
"We loved our stay! "
United States
Christine
The price is ฿3,306
฿3,891 total
includes taxes & fees
8 Jan - 9 Jan
Hilton San Francisco Financial District

Handlery Union Square Hotel

Handlery Union Square Hotel
3.5 star property
Union Square, 2.4 km from Mission Bay
8.8 out of 10, Excellent, (2828)
"Ok place to stay"
United States
Jovana
The price is ฿23,619
฿27,799 total
includes taxes & fees
5 Feb - 6 Feb
Handlery Union Square Hotel

Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.6 km from Mission Bay
9.0 out of 10, Wonderful, (3851)
"Great location and great staff"
United Kingdom
Stephanie
The price is ฿3,993
฿6,146 total
includes taxes & fees
8 Jan - 9 Jan
Hotel Caza Fisherman's Wharf

Hotel Zoe Fisherman's Wharf

Hotel Zoe Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
9.2 out of 10, Wonderful, (1660)
"Great location, service, and rooms!"
United States
Joyce
The price is ฿3,462
฿5,412 total
includes taxes & fees
7 Jan - 8 Jan
Hotel Zoe Fisherman's Wharf

King George Hotel

King George Hotel
3.0 star property
2.4 km from Mission Bay
8.6 out of 10, Excellent, (2105)
"The staff were all friendly and courteous, the room and bathroom were very clean, the beds were comfortable and a very good location."
United States
Jamie
The price is ฿2,639
฿3,579 total
includes taxes & fees
7 Jan - 8 Jan
King George Hotel

Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
8.6 out of 10, Excellent, (2368)
"Great place to stay with kids. Walkable to most everything and seemed very safe "
United States
Amy
The price is ฿3,869
฿5,852 total
includes taxes & fees
7 Jan - 8 Jan
Hotel Zephyr San Francisco

YOTEL San Francisco

YOTEL San Francisco
3.0 star property
2.1 km from Mission Bay
8.2 out of 10, Very good, (1009)
"Great place to stay. This is my second time here and I’m never disappointed!"
United States
Adan
The price is ฿2,385
฿4,105 total
includes taxes & fees
8 Jan - 9 Jan
YOTEL San Francisco

Holiday Inn Golden Gateway by IHG

Holiday Inn Golden Gateway by IHG
3.5 star property
Nob Hill, 3.4 km from Mission Bay
9.0 out of 10, Wonderful, (5112)
"Great stay!"
United States
Carlos Emiro
The price is ฿3,805
฿4,479 total
includes taxes & fees
7 Jan - 8 Jan
Holiday Inn Golden Gateway by IHG

Club Quarters Hotel in San Francisco

Club Quarters Hotel in San Francisco
4.0 star property
Financial District, 2.8 km from Mission Bay
8.8 out of 10, Excellent, (2871)
"Clean room, friendly staff and good location"
United States
Jose Eduardo
The price is ฿3,283
฿3,864 total
includes taxes & fees
23 Jan - 24 Jan
Club Quarters Hotel in San Francisco

DoubleTree by Hilton San Francisco Airport North Bayfront

DoubleTree by Hilton San Francisco Airport North Bayfront
4.0 star property
10.8 km from Mission Bay
8.0 out of 10, Very good, (1359)
"It was a comfortable stay there. "
United States
Asif
The price is ฿2,542
฿3,008 total
includes taxes & fees
9 Jan - 10 Jan
DoubleTree by Hilton San Francisco Airport North Bayfront

Chancellor Hotel on Union Square

Chancellor Hotel on Union Square
3.5 star property
2.5 km from Mission Bay
9.4 out of 10, Exceptional, (3128)
"Location, ease of check in, great staff"
United States
Margaret
The price is ฿2,388
฿2,821 total
includes taxes & fees
7 Jan - 8 Jan
Chancellor Hotel on Union Square

Hotel Nikko San Francisco

Hotel Nikko San Francisco
4.5 star property
Union Square, 2.3 km from Mission Bay
9.4 out of 10, Exceptional, (2680)
"Great service, great location, great hotel. "
United States
Laura
The price is ฿4,796
฿7,094 total
includes taxes & fees
23 Jan - 24 Jan
Hotel Nikko San Francisco

The Westin San Francisco Airport

The Westin San Francisco Airport
4.0 star property
18.6 km from Mission Bay
8.8 out of 10, Excellent, (2025)
"Comfortable room, welcome glass of wine, easy shuttle to and from airport, friendly staff."
United States
Carole
The price is ฿3,223
฿4,621 total
includes taxes & fees
9 Jan - 10 Jan
The Westin San Francisco Airport

Stanford Court San Francisco

Stanford Court San Francisco
4.0 star property
Nob Hill, 2.9 km from Mission Bay
9.0 out of 10, Wonderful, (1336)
"Very good location!"
United States
robin
The price is ฿3,806
฿5,890 total
includes taxes & fees
31 Jan - 1 Feb
Stanford Court San Francisco

Holiday Inn Express and Suites Fisherman's Wharf by IHG

Holiday Inn Express and Suites Fisherman's Wharf by IHG
3.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
9.0 out of 10, Wonderful, (2263)
"Awesome place to stay"
United States
Mark Anthony
The price is ฿3,846
฿5,551 total
includes taxes & fees
15 Jan - 16 Jan
Holiday Inn Express and Suites Fisherman's Wharf by IHG

Hotel Shattuck Plaza

Hotel Shattuck Plaza
4.0 star property
15.4 km from Mission Bay
8.8 out of 10, Excellent, (1107)
"Was great staff was awesome very helpful "
United States
Shiana
Hotel Shattuck Plaza

Hilton San Francisco Airport Bayfront

Hilton San Francisco Airport Bayfront
4.0 star property
20.5 km from Mission Bay
8.6 out of 10, Excellent, (2835)
"Great place "
United States
Niharika
The price is ฿3,313
฿3,766 total
includes taxes & fees
16 Jan - 17 Jan
Hilton San Francisco Airport Bayfront

FOUND Hotel, San Francisco

FOUND Hotel, San Francisco
2.0 star property
Union Square, 2.2 km from Mission Bay
8.4 out of 10, Very good, (712)
"Great location"
United States
Michele
FOUND Hotel, San Francisco
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Union Square

Fashion puts on its finest face in one of the country’s largest shopping plazas.

Downtown San Francisco

Known for its fascinating museums, popular shops and acclaimed art galleries, there's plenty to explore in Downtown San Francisco. Top attractions like Oracle Park and San Francisco Bay are major draws. Catch the metro at Market St & 5th St Stop or Market St & Taylor St Stop to see more of the city.

Fisherman's Wharf

This waterfront neighborhood dates back to the gold rush era and is a hub for tourist activities, sea lions and seafood restaurants.

South of Market

From baseball games to top-notch art exhibits, find endless entertainment in one of San Francisco’s fastest-growing neighborhoods.

Nob Hill

Examine architecturally significant buildings, visit the Cable Car Museum and enjoy magnificent views of greater San Francisco in this affluent district.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
Travellers will be sure to enjoy their time in San Francisco's Mission Bay neighbourhood. Make sure that you visit Chase Center and Lefty O'Doul Bridge as part of your Mission Bay travel plans.
Where is the best place to stay in Mission Bay?
Based on Expedia customer reviews, LUMA Hotel San Francisco is the highest ranked property in Mission Bay. This hotel is a short 5-minute walk from Oracle Park, and it offers a restaurant and a fitness centre.
How many hotels will I be able to find in Mission Bay?
When you want to put your feet up after a day of exploring the sights in San Francisco, you can choose from 18 Expedia hotels and other accommodation options in Mission Bay.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes! The majority of hotel bookings are fully refundable provided that you cancel prior to the accommodation's cancellation deadline, which often is within 24-48 hours of your check-in date. If you have a non-refundable reservation, it might still be possible to cancel it and be given a refund within 24 hours of booking. Put your dates in and click on "Search", then you can filter by "fully refundable" to review the best deals available in Mission Bay.
What are the top things to see and do in Mission Bay?
Chase Center, Lefty O'Doul Bridge and Lucky Strike San Francisco are just a few attractions to check out in Mission Bay. While you're out sightseeing, Oracle Park and Pier 39 are a couple of additional sights to visit in San Francisco.
How can I get around Mission Bay and the greater San Francisco area?
For a quick way to explore the city, catch a ride on metro transit at UCSF/Chase Center Stop, Mission Rock Station or UCSF Mission Bay Stop. To venture out of town, take a train from San Francisco Station.