Search Hotels in Mission Bay, San Francisco

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Our top choices for Mission Bay hotels

LUMA Hotel San Francisco

LUMA Hotel San Francisco
4.0 star property
Mission Bay
9.6 out of 10, Exceptional, (2,444 reviews)
"Great stay! "
United States
Jeremy
The price is ฿7,934
฿9,338 total
includes taxes & fees
4 Apr - 5 Apr
LUMA Hotel San Francisco

The Evergreen

The Evergreen
2.0 star property
20.3 km from Mission Bay
9.2 out of 10, Wonderful, (455 reviews)
"Easy access, beautiful location and nice stay."
United States
Guadalupe
The price is ฿3,838
฿4,299 total
includes taxes & fees
11 Mar - 12 Mar
The Evergreen

Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
9.0 out of 10, Wonderful, (7,368 reviews)
"excellent breakfast and location "
United States
Leslie
The price is ฿4,649
฿6,774 total
includes taxes & fees
18 Mar - 19 Mar
Hotel Riu Plaza Fisherman's Wharf

Marin Lodge

Marin Lodge
2.0 star property
26.6 km from Mission Bay
9.6 out of 10, Exceptional, (1,002 reviews)
"Friendly staff, easy check in, spacious clean room, comfortable bed, quiet, great value for the area. Lots of good dining options nearby. Highly recommend, will be back."
United States
Brad
The price is ฿3,443
฿3,856 total
includes taxes & fees
9 Mar - 10 Mar
Marin Lodge

The Westin San Francisco Airport

The Westin San Francisco Airport
4.0 star property
18.7 km from Mission Bay
8.8 out of 10, Excellent, (1,959 reviews)
"Friendly staff, great location for the airport and food was tasty. However, rooms are tired and the restaurant opens quite late in the morning"
United Kingdom
keith
The price is ฿3,134
฿4,526 total
includes taxes & fees
8 Mar - 9 Mar
The Westin San Francisco Airport

Aloft San Francisco Airport

Aloft San Francisco Airport
3.0 star property
18.7 km from Mission Bay
9.0 out of 10, Wonderful, (2,256 reviews)
"Great place! "
United States
Jon
The price is ฿3,586
฿4,122 total
includes taxes & fees
6 Mar - 7 Mar
Aloft San Francisco Airport

Hilton San Francisco Airport Bayfront

Hilton San Francisco Airport Bayfront
4.0 star property
20.5 km from Mission Bay
8.6 out of 10, Excellent, (2,931 reviews)
"The room and breakfast was perfect "
United States
Daniel
The price is ฿3,341
฿3,799 total
includes taxes & fees
3 Apr - 4 Apr
Hilton San Francisco Airport Bayfront

Pacifica Beach Hotel

Pacifica Beach Hotel
2.5 star property
21.3 km from Mission Bay
8.0 out of 10, Very good, (1,007 reviews)
"Easy check-in, courteous staff, across the street from beach, 3 blocks from stores & restaurants."
United States
Constance
The price is ฿3,195
฿3,714 total
includes taxes & fees
11 Mar - 12 Mar
Pacifica Beach Hotel

Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.6 km from Mission Bay
9.0 out of 10, Wonderful, (3,847 reviews)
"Nice stay"
United States
Richard
The price is ฿4,156
฿6,416 total
includes taxes & fees
29 Mar - 30 Mar
Hotel Caza Fisherman's Wharf

Cow Hollow Inn & Suites

Cow Hollow Inn & Suites
3.5 star property
Marina District, 5.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,512 reviews)
"Good location nice rooms "
United States
Gillian
The price is ฿3,987
฿4,638 total
includes taxes & fees
8 Mar - 9 Mar
Cow Hollow Inn & Suites

Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
8.6 out of 10, Excellent, (2,455 reviews)
"Great location on the wharf, with many restaurants, and activities in the area."
United States
Frank
The price is ฿4,645
฿6,768 total
includes taxes & fees
15 Mar - 16 Mar
Hotel Zephyr San Francisco

The Dylan at SFO

The Dylan at SFO
3.0 star property
19.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,848 reviews)
"great hotel, well designed, comfortable beds, easy access to the bart and aiport"
United States
Alan
The Dylan at SFO

The Marina Inn on San Francisco Bay

The Marina Inn on San Francisco Bay
3.5 star property
19.6 km from Mission Bay
8.6 out of 10, Excellent, (2,338 reviews)
"staff was amazing hotel could use a renovation but was still perfect for what we needed"
United States
ethan
The Marina Inn on San Francisco Bay

DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina
4.0 star property
12.8 km from Mission Bay
8.2 out of 10, Very good, (4,330 reviews)
"Great location great breakfast restaurant!"
United States
Maria
The price is ฿3,544
฿4,083 total
includes taxes & fees
22 Mar - 23 Mar
DoubleTree by Hilton Hotel Berkeley Marina

Marina Motel

Marina Motel
2.0 star property
Marina District, 5.6 km from Mission Bay
9.0 out of 10, Wonderful, (1,008 reviews)
"It has always been a nice stay"
United States
John
The price is ฿5,212
฿6,073 total
includes taxes & fees
12 Mar - 13 Mar
Marina Motel

Hotel Zoe Fisherman's Wharf

Hotel Zoe Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.4 km from Mission Bay
9.2 out of 10, Wonderful, (1,757 reviews)
"Great location, wonderful staff, and nice hotel. "
United States
Nivia
The price is ฿3,786
฿5,800 total
includes taxes & fees
30 Mar - 31 Mar
Hotel Zoe Fisherman's Wharf

Holiday Inn Express and Suites Fisherman's Wharf by IHG

Holiday Inn Express and Suites Fisherman's Wharf by IHG
3.0 star property
Fisherman's Wharf, 4.6 km from Mission Bay
9.2 out of 10, Wonderful, (2,307 reviews)
"The staff was amazing as well as the room and the location to local attractions "
United States
Rachael K
The price is ฿4,269
฿6,051 total
includes taxes & fees
6 Mar - 7 Mar
Holiday Inn Express and Suites Fisherman's Wharf by IHG

Lafayette Park Hotel & Spa

Lafayette Park Hotel & Spa
4.0 star property
29 km from Mission Bay
9.4 out of 10, Exceptional, (1,013 reviews)
"Very nice, enjoyed my time here"
United States
David
The price is ฿6,954
฿7,629 total
includes taxes & fees
12 Mar - 13 Mar
Lafayette Park Hotel & Spa

Embassy Suites by Hilton San Francisco Airport Waterfront

Embassy Suites by Hilton San Francisco Airport Waterfront
3.5 star property
20.3 km from Mission Bay
8.6 out of 10, Excellent, (1,963 reviews)
"Great stay!"
United States
William
The price is ฿3,867
฿4,397 total
includes taxes & fees
29 Mar - 30 Mar
Embassy Suites by Hilton San Francisco Airport Waterfront

Best Western Plus Grosvenor Airport Hotel

Best Western Plus Grosvenor Airport Hotel
3.0 star property
14.2 km from Mission Bay
8.4 out of 10, Very good, (1,731 reviews)
"Great food, clean room, great service!"
United States
Shruti
The price is ฿2,780
฿3,289 total
includes taxes & fees
8 Mar - 9 Mar
Best Western Plus Grosvenor Airport Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Union Square

Fashion puts on its finest face in one of the country’s largest shopping plazas.

Fisherman's Wharf

This waterfront neighborhood dates back to the gold rush era and is a hub for tourist activities, sea lions and seafood restaurants.

Downtown San Francisco

Known for its fascinating museums, popular shops and acclaimed art galleries, there's plenty to explore in Downtown San Francisco. Top attractions like Oracle Park and Warfield Theatre are major draws. Catch the metro at Market St & 5th St Stop or Market St & Taylor St Stop to see more of the city.

South of Market

From baseball games to top-notch art exhibits, find endless entertainment in one of San Francisco’s fastest-growing neighborhoods.

Nob Hill

Examine architecturally significant buildings, visit the Cable Car Museum and enjoy magnificent views of greater San Francisco in this affluent district.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
Travellers will be sure to enjoy their time in San Francisco's Mission Bay neighbourhood. Make sure that you visit Chase Center and Lefty O'Doul Bridge as part of your Mission Bay travel plans.
Where is the best place to stay in Mission Bay?
Based on Expedia customer reviews, LUMA Hotel San Francisco is the highest ranked property in Mission Bay. This hotel is a short 5-minute walk from Oracle Park, and it offers a restaurant and a fitness centre.
How many hotels will I be able to find in Mission Bay?
When you want to put your feet up after a day of exploring the sights in San Francisco, you can choose from 16 Expedia hotels and other accommodation options in Mission Bay.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes! The majority of hotel bookings are fully refundable provided that you cancel prior to the accommodation's cancellation deadline, which often is within 24-48 hours of your check-in date. If you have a non-refundable reservation, it might still be possible to cancel it and be given a refund within 24 hours of booking. Put your dates in and click on "Search", then you can filter by "fully refundable" to review the best deals available in Mission Bay.
What are the top things to see and do in Mission Bay?
Chase Center, Lefty O'Doul Bridge and Lucky Strike San Francisco are just a few attractions to check out in Mission Bay. While you're out sightseeing, Oracle Park and Pier 39 are a couple of additional sights to visit in San Francisco.
How can I get around Mission Bay and the greater San Francisco area?
For a quick way to explore the city, catch a ride on metro transit at UCSF/Chase Center Stop, Mission Rock Station or UCSF Mission Bay Stop. To venture out of town, take a train from San Francisco Station.