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Our top choices for Mission Bay hotels

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (204 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
ITH Mission Beach Backpacker Hostel

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,020 reviews)
"Great location, friendly attentive staff and great tv setup in rooms."
United States
John
The price is ฿4,933
฿6,383 total
includes taxes & fees
25 Jan - 26 Jan
The Dana on Mission Bay

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (280 reviews)
"Wonderful mission beach stay! The room had a great kitchenette and small dining table/chairs. Super close to the beach. We rented the free bicycles and rode up the coast which was super fun! Private hot tub was great to relax in at the end of the day."
United States
Katherine
The price is ฿5,043
฿5,686 total
includes taxes & fees
26 Jan - 27 Jan
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,719 reviews)
"Great location. Easy access to beach and boardwalk."
United States
Fernando
The price is ฿5,311
฿6,105 total
includes taxes & fees
26 Jan - 27 Jan
The Wayfarer San Diego

Hampton Inn & Suites by Hilton San Diego SeaWorld

Hampton Inn & Suites by Hilton San Diego SeaWorld
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (540 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is ฿3,299
฿3,792 total
includes taxes & fees
29 Jan - 30 Jan
Hampton Inn & Suites by Hilton San Diego SeaWorld

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,003 reviews)
"Staff was very friendly and accommodating "
United States
Nicole
The price is ฿4,033
฿4,636 total
includes taxes & fees
27 Jan - 28 Jan
The Beach Cottages

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,338 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is ฿5,714
฿8,208 total
includes taxes & fees
22 Feb - 23 Feb
San Diego Mission Bay Resort

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,853 reviews)
"Beautiful property and excellent amenities. "
United States
Phillip
The price is ฿4,720
฿7,152 total
includes taxes & fees
1 Feb - 2 Feb
Bahia Resort Hotel

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,003 reviews)
"very spacious room very clean close to everything restaurant stores Central located."
United States
Walter
The price is ฿3,692
฿4,244 total
includes taxes & fees
26 Jan - 27 Jan
Holiday Inn Express San Diego - SeaWorld Area by IHG

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
2.5 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (838 reviews)
"Great stay!"
United States
Cynthia
The price is ฿3,444
฿3,958 total
includes taxes & fees
29 Jan - 30 Jan
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,590 reviews)
"Staff was extremely friendly and helpful.. from the valet to front desk and restaurant staff. Rooms were comfortable, spacious and clean. It was a great stay and conveniently close to SeaWorld. "
United States
Brandon
The price is ฿4,623
฿6,955 total
includes taxes & fees
25 Jan - 26 Jan
Hyatt Regency Mission Bay Spa and Marina

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.4 out of 10, Very good, (245 reviews)
"Clean hotel & great location. "
United States
yardley
The price is ฿2,634
฿3,028 total
includes taxes & fees
28 Jan - 29 Jan
Best Western San Diego Pacific Beach/Mission Bay

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,270 reviews)
"Great location, friendly staff 👍 "
United States
Maria
The price is ฿2,492
฿2,865 total
includes taxes & fees
27 Jan - 28 Jan
Comfort Inn Sea World Area

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,915 reviews)
"The staff was very nice and great location"
United States
Curtis
The price is ฿2,381
฿2,737 total
includes taxes & fees
26 Jan - 27 Jan
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,192 reviews)
"I love surfer Beach Hotel. It’s close to Woody’s and the duck dive bar and restaurant."
United States
Richard
The price is ฿4,902
฿5,537 total
includes taxes & fees
25 Jan - 26 Jan
Surfer Beach Hotel

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,135 reviews)
"Great location! Wonderful staff, clean facilities, lots to do."
United States
Elizabeth
The price is ฿5,234
฿7,688 total
includes taxes & fees
22 Feb - 23 Feb
Catamaran Resort and Spa

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,478 reviews)
"Clean room , good breakfast, convenient location "
United States
Angela
The price is ฿2,457
฿2,775 total
includes taxes & fees
27 Jan - 28 Jan
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (255 reviews)
"Ocean view couldnt be better Why i picked this Not normally a hostel woman"
United States
Vickie
The price is ฿2,379
฿2,682 total
includes taxes & fees
26 Jan - 27 Jan
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,215 reviews)
"Clean room, Friendly staff and easy parking. Great value for the price paid."
United States
ASIM
The price is ฿1,863
฿2,141 total
includes taxes & fees
26 Jan - 27 Jan
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,153 reviews)
"Good location friendly staff"
United States
Anya
The price is ฿2,623
฿3,015 total
includes taxes & fees
27 Jan - 28 Jan
Wyndham Garden San Diego Near SeaWorld
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 47 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
San Diego Mission Bay Resort is one of the top choices for your stay based on our traveller data, and this resort offers a full-service spa and 2 restaurants. It's located just a short 0.9 mi (1.5 km) from Mission Bay. Another good option is Paradise Point Resort & Spa, located just 0.8 mi (1.3 km) away.
How many hotels will I find near Mission Bay?
Expedia has 47 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.