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Our top choices for Mission Bay hotels

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,049 reviews)
"Great spot, great hotel, great food options!"
United States
Demes SP
The price is ฿4,965
฿6,424 total
includes taxes & fees
22 Feb - 23 Feb
The Dana on Mission Bay

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (282 reviews)
"Everything was great!"
United States
Sophia
The price is ฿4,179
฿4,711 total
includes taxes & fees
29 Jan - 30 Jan
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (204 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
ITH Mission Beach Backpacker Hostel

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,390 reviews)
"Clean rooms, friendly staff, and a beautiful view all around.. "
United States
Morgan
The price is ฿4,654
฿6,985 total
includes taxes & fees
1 Feb - 2 Feb
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,721 reviews)
"Great location. Easy access to beach and boardwalk."
United States
Fernando
The price is ฿5,541
฿6,369 total
includes taxes & fees
29 Jan - 30 Jan
The Wayfarer San Diego

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (573 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is ฿3,815
฿4,385 total
includes taxes & fees
30 Jan - 31 Jan
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,001 reviews)
"Good location with friendly staff"
United States
Frank
The price is ฿4,020
฿4,621 total
includes taxes & fees
29 Jan - 30 Jan
The Beach Cottages

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,001 reviews)
"very spacious room very clean close to everything restaurant stores Central located."
United States
Walter
The price is ฿4,652
฿5,348 total
includes taxes & fees
29 Jan - 30 Jan
Holiday Inn Express San Diego - SeaWorld Area by IHG

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,339 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is ฿5,751
฿8,261 total
includes taxes & fees
22 Feb - 23 Feb
San Diego Mission Bay Resort

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,865 reviews)
"Our stay was awesome! Beach front room, quick and easy guest services and super clean property! We will be staying here again"
United States
KOURTNEY
The price is ฿4,751
฿7,198 total
includes taxes & fees
1 Feb - 2 Feb
Bahia Resort Hotel

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,597 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is ฿4,916
฿7,287 total
includes taxes & fees
30 Jan - 31 Jan
Hyatt Regency Mission Bay Spa and Marina

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
2.5 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (845 reviews)
"Excellent hotel and really nice breakfast"
United States
Luke
The price is ฿3,841
฿4,415 total
includes taxes & fees
8 Feb - 9 Feb
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.4 out of 10, Very good, (252 reviews)
"Clean hotel & great location. "
United States
yardley
The price is ฿2,893
฿3,325 total
includes taxes & fees
22 Feb - 23 Feb
Best Western San Diego Pacific Beach/Mission Bay

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,295 reviews)
"Nice beds and breakfast, really convenient "
Canada
Margarita
The price is ฿2,628
฿3,020 total
includes taxes & fees
8 Feb - 9 Feb
Comfort Inn Sea World Area

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,926 reviews)
"The staff was very nice and great location"
United States
Curtis
The price is ฿2,716
฿3,121 total
includes taxes & fees
1 Feb - 2 Feb
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,194 reviews)
"I love surfer Beach Hotel. It’s close to Woody’s and the duck dive bar and restaurant."
United States
Richard
The price is ฿4,933
฿5,572 total
includes taxes & fees
8 Feb - 9 Feb
Surfer Beach Hotel

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,137 reviews)
"Great location! Wonderful staff, clean facilities, lots to do."
United States
Elizabeth
The price is ฿5,282
฿7,737 total
includes taxes & fees
1 Feb - 2 Feb
Catamaran Resort and Spa

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,497 reviews)
"Clean room , good breakfast, convenient location "
United States
Angela
The price is ฿2,669
฿3,015 total
includes taxes & fees
29 Jan - 30 Jan
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (255 reviews)
"Ocean view couldnt be better Why i picked this Not normally a hostel woman"
United States
Vickie
The price is ฿3,069
฿3,460 total
includes taxes & fees
2 Feb - 3 Feb
ITH Beach Bungalow Surf Hostel

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,170 reviews)
"Good location friendly staff"
United States
Anya
The price is ฿2,779
฿3,194 total
includes taxes & fees
29 Jan - 30 Jan
Wyndham Garden San Diego Near SeaWorld
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 46 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
San Diego Mission Bay Resort is one of the top choices for your stay based on our traveller data, and this resort offers a full-service spa and 2 restaurants. It's located just a short 0.9 mi (1.5 km) from Mission Bay. Another good option is Paradise Point Resort & Spa, located just 0.8 mi (1.3 km) away.
How many hotels will I find near Mission Bay?
Expedia has 46 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.