A marina with various boats docked, including a yellow and white boat named 'Golden Gate'.

Search Boutique Hotels in Fisherman's Wharf

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Fisherman's Wharf Boutique Hotels

This weekend
2 Oct - 4 Oct
Next weekend
9 Oct - 11 Oct

Our top choices for Fisherman's Wharf boutique hotels

An outdoor cafe with brick walls, outdoor seating, and a tree in the foreground.

1. Argonaut Hotel

Argonaut Hotel
4.5 star property
Fisherman's Wharf
9.4 out of 10, Exceptional, (1,377 reviews)
"Great location and good service."
United States
Ann
The price is ฿7,228
฿9,971 total
includes taxes & fees
1 Nov - 2 Nov
Argonaut Hotel
A hotel courtyard with outdoor seating, a fire pit, and a vintage camper parked nearby.

2. Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
Fisherman's Wharf
8.6 out of 10, Excellent, (2,861 reviews)
"Great central location."
Canada
Larissa
The price is ฿5,275
฿7,591 total
includes taxes & fees
31 Oct - 1 Nov
Hotel Zephyr San Francisco
A covered outdoor dining area with a wooden deck, a table set for two, and a view of the sea and mountains in the background.

3. Fairmont Heritage Place, Ghirardelli Square

Fairmont Heritage Place, Ghirardelli Square
5.0 star property
Fisherman's Wharf
9.4 out of 10, Exceptional, (415 reviews)
"Excellent location and rooms - great space for families. Very helpful and friendly staff."
United States
Janelle
The price is ฿30,077
฿35,341 total
includes taxes & fees
30 Oct - 31 Oct
Fairmont Heritage Place, Ghirardelli Square
A spacious lobby with a reception desk, seating area, and a staircase leading to an upper level.

4. Hotel Triton Union Square San Francisco

Hotel Triton Union Square San Francisco
4.0 star property
Union Square
8.6 out of 10, Excellent, (1,004 reviews)
"My husband, dachshund, and I loved our stay here! The staff is friendly, the hotel was tastefully decorated, and the location was great. We will defintley stay here again in the future!"
United States
Sarah
The price is ฿4,085
฿6,270 total
includes taxes & fees
23 Oct - 24 Oct
Hotel Triton Union Square San Francisco
A modern hotel room with a grey sofa, a dining table, a TV, and a large window with curtains.

5. The Clift Royal Sonesta San Francisco

The Clift Royal Sonesta San Francisco
4.0 star property
Union Square
9.2 out of 10, Wonderful, (1,532 reviews)
"Great location, staff and amenities and of course the Redwood Room!"
United States
Randall Gray
The price is ฿7,019
฿9,571 total
includes taxes & fees
23 Oct - 24 Oct
The Clift Royal Sonesta San Francisco
A modern bar area with a long wooden counter, multiple bar stools, and a variety of bottles and glasses.

6. Hotel Emblem San Francisco

Hotel Emblem San Francisco
4.0 star property
Union Square
9.4 out of 10, Exceptional, (1,025 reviews)
"Cool hotel, great location and very clean"
United States
Keegan
The price is ฿4,570
฿6,724 total
includes taxes & fees
1 Nov - 2 Nov
Hotel Emblem San Francisco
A modern living room with a large window overlooking a bridge, a flat-screen TV, a clock, and a brown leather sofa.

7. Harbor Court Hotel

Harbor Court Hotel
4.0 star property
Downtown San Francisco
9.2 out of 10, Wonderful, (1,000 reviews)
"Great stay, good location, kind staff"
Canada
Yoojin
The price is ฿6,575
฿9,359 total
includes taxes & fees
23 Oct - 24 Oct
Harbor Court Hotel
An indoor swimming pool with arched ceilings and a reflection pool.

8. Berkeley City Club

Berkeley City Club
2.5 star property
Telegraph District
8.8 out of 10, Excellent, (775 reviews)
"Great stay for a night."
United States
Brett
The price is ฿6,171
฿7,097 total
includes taxes & fees
11 Oct - 12 Oct
Berkeley City Club
A spacious lobby with a staircase, comfortable seating areas, and large windows offering views of the city.

9. The Clancy, Autograph Collection by Marriott

The Clancy, Autograph Collection by Marriott
4.0 star property
Downtown San Francisco
9.2 out of 10, Wonderful, (1,014 reviews)
"The staff was extremely welcoming and helpful. Beautiful hotel!"
Canada
Samantha
The price is ฿5,843
฿8,388 total
includes taxes & fees
30 Oct - 31 Oct
The Clancy, Autograph Collection by Marriott
A multi-story building with a fire escape, a ground-level entrance with a sign reading "Patio Hotel," and a storefront with a sign for "Liquor Deli."

10. Palihotel San Francisco

Palihotel San Francisco
4.0 star property
Union Square
8.4 out of 10, Very good, (760 reviews)
"Pros: Chic overall aesthetic, Interior design, Dyptique toiletries, great minibar and minifridge options Cons: Old elevator so a bit slow and small, limited shelving in bathroom, hotel charges more for parking than if you pay directly through the parking garage"
United States
Kyle
The price is ฿5,373
฿6,324 total
includes taxes & fees
4 Oct - 5 Oct
Palihotel San Francisco
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Fisherman's Wharf Hotel Reviews

Grand Hyatt San Francisco

Grand Hyatt San Francisco

10/10 Excellent
"Loved the bar and lobby to hang after hours. Elevators took a really long time. Spacious room. Yummy drinks and food"
Misael 2-night trip
Posted 1 hour ago
Grand Hyatt San Francisco

Frequently asked questions

What's the best boutique-style hotel in Fisherman's Wharf?
Hotel Zephyr San Francisco is a favourite hotel with Expedia travellers looking for a stylish stay, and features a 24-hour fitness centre and free WiFi. Argonaut Hotel and Fairmont Heritage Place, Ghirardelli Square are other choices for a boutique stay.
What's there to see and do in Fisherman's Wharf?
Visitors speak positively about this destination's beautiful ocean views, major shopping centres and top museums. Top activities and sights around Fisherman's Wharf include Pier 39, Oracle Park and Chase Center. You might also want to see spots like San Francisco Bay, Ghirardelli Square and San Francisco Carousel during your trip.
What's the best way to get to my boutique hotel in Fisherman's Wharf?
You have a few options for getting to Fisherman's Wharf. The nearest major airport is Oakland, CA (OAK-Oakland Intl.), which is located 13 mi (20.9 km) away. Walk to nearby metro stations such as Jones St and Beach St Stop, Jefferson St & Taylor St Stop and Hyde St & Beach St Stop.