A marina with various boats docked, including a yellow and white boat named 'Golden Gate'.

Search Boutique Hotels in Fisherman's Wharf

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Fisherman's Wharf Boutique Hotels

Our top choices for Fisherman's Wharf boutique hotels

An outdoor cafe with brick walls, outdoor seating, and a tree in the foreground.

1. Argonaut Hotel

Argonaut Hotel
4.5 star property
Fisherman's Wharf
9.4 out of 10, Exceptional, (1,382 reviews)
"Love the location The hotel restaurant is amazing"
United States
Vickie
The price is ฿8,038
฿10,926 total
includes taxes & fees
8 Nov - 9 Nov
Argonaut Hotel
A hotel courtyard with outdoor seating, a fire pit, and a vintage camper parked nearby.

2. Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
Fisherman's Wharf
8.6 out of 10, Excellent, (2,877 reviews)
"Amazing place to stay , very clean , close to everything"
United States
Rebecca
The price is ฿4,961
฿7,224 total
includes taxes & fees
8 Nov - 9 Nov
Hotel Zephyr San Francisco
A covered outdoor dining area with a table set for two, surrounded by chairs, under a metal roof with a weather vane.

3. Fairmont Heritage Place, Ghirardelli Square

Fairmont Heritage Place, Ghirardelli Square
5.0 star property
Fisherman's Wharf
9.4 out of 10, Exceptional, (415 reviews)
"Excellent location and rooms - great space for families. Very helpful and friendly staff."
United States
Janelle
The price is ฿29,996
฿35,245 total
includes taxes & fees
30 Oct - 31 Oct
Fairmont Heritage Place, Ghirardelli Square
A balcony with a view of a tall building, a tree, and a table with chairs.

4. The Huntington Hotel

The Huntington Hotel
5.0 star property
Downtown San Francisco
9.4 out of 10, Exceptional, (43 reviews)
"History like"
United States
Liya
The price is ฿26,778
฿33,292 total
includes taxes & fees
17 Oct - 18 Oct
The Huntington Hotel
A courtyard with a stone pathway, outdoor seating, and potted plants.

5. Hotel Kabuki, part of JdV by Hyatt

Hotel Kabuki, part of JdV by Hyatt
4.0 star property
Western Addition
9.0 out of 10, Wonderful, (1,000 reviews)
"Very nice and calming place to stay"
United States
Filiberto
The price is ฿7,635
฿10,264 total
includes taxes & fees
8 Nov - 9 Nov
Hotel Kabuki, part of JdV by Hyatt
A modern bar area with a long wooden counter, multiple bar stools, and a variety of bottles and glasses.

6. Hotel Emblem San Francisco

Hotel Emblem San Francisco
4.0 star property
Union Square
9.4 out of 10, Exceptional, (1,001 reviews)
"Great place to stay that has a lot of food options close by."
United States
cynthia lee
The price is ฿4,612
฿6,769 total
includes taxes & fees
13 Nov - 14 Nov
Hotel Emblem San Francisco
A spacious lobby with a chandelier, a reception desk, a blue sofa, and a trash can.

7. Kensington Park Hotel

Kensington Park Hotel
3.5 star property
Union Square
8.6 out of 10, Excellent, (1,000 reviews)
The price is ฿4,675
฿5,503 total
includes taxes & fees
8 Nov - 9 Nov
Kensington Park Hotel
A grand lobby with high ceilings, chandeliers, and a fireplace.

8. The Marker Union Square San Francisco

The Marker Union Square San Francisco
4.0 star property
Union Square
9.2 out of 10, Wonderful, (1,584 reviews)
"Great place to stay!"
Canada
Samantha
The price is ฿5,397
฿6,352 total
includes taxes & fees
14 Nov - 15 Nov
The Marker Union Square San Francisco
A modern living room with a large window overlooking a bridge, a flat-screen TV, a clock, and a brown leather sofa.

9. Harbor Court Hotel

Harbor Court Hotel
4.0 star property
Downtown San Francisco
9.2 out of 10, Wonderful, (1,001 reviews)
"Was an amazing experience for fleet week"
United States
Emily
The price is ฿6,508
฿9,278 total
includes taxes & fees
17 Oct - 18 Oct
Harbor Court Hotel
A bar area with a marble countertop, leather bar stools, and shelves stocked with bottles and glasses.

10. Taj Campton Place

Taj Campton Place
5.0 star property
Union Square
9.2 out of 10, Wonderful, (1,001 reviews)
"Wonderful service, convenient, delicious food!"
United States
Vince
The price is ฿6,189
฿8,458 total
includes taxes & fees
25 Oct - 26 Oct
Taj Campton Place
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Fisherman's Wharf Hotel Reviews

Hotel Zephyr San Francisco

Hotel Zephyr San Francisco

8/10 Good
"Great property close to Wharf attractions. Each time we left the room we had to pull our door shut as it would not close all the way on its own."
Evette 2-night trip
Posted 3 hours ago
Hotel Zephyr San Francisco

Frequently asked questions

What's the best boutique-style hotel in Fisherman's Wharf?
Hotel Zephyr San Francisco is a favourite hotel with Expedia travellers looking for a stylish stay, and features a 24-hour fitness centre and free WiFi. Argonaut Hotel and Fairmont Heritage Place, Ghirardelli Square are other choices for a boutique stay.
What's there to see and do in Fisherman's Wharf?
Visitors speak positively about this destination's beautiful ocean views, major shopping centres and top museums. Top activities and sights around Fisherman's Wharf include Pier 39, Oracle Park and Chase Center. You might also want to see spots like San Francisco Bay, Ghirardelli Square and San Francisco Carousel during your trip.
What's the best way to get to my boutique hotel in Fisherman's Wharf?
You have a few options for getting to Fisherman's Wharf. The nearest major airport is Oakland, CA (OAK-Oakland Intl.), which is located 13 mi (20.9 km) away. Walk to nearby metro stations such as Jones St and Beach St Stop, Jefferson St & Taylor St Stop and Hyde St & Beach St Stop.