TOP Boutique Hotels in San Diego, CA for 2026

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Our top choices for San Diego boutique hotels

Superior Room, 1 King Bed, Private Bathroom, City View (Self check-in)

Superior Room, 1 King Bed, Private Bathroom, City View (Self check-in) | Living area

Superior Room, 1 King Bed, Private Bathroom, City View (Self check-in) | Bathroom

1. Keating Hotel By At Mine Hospitality

Downtown San Diego

Khoi

฿2,007

฿4,886 total

includes taxes & fees

8 Sept - 9 Sept

2. Hotel Indigo San Diego-Gaslamp Quarter by IHG

Downtown San Diego

Maraya

฿5,339

฿7,652 total

includes taxes & fees

8 Sept - 9 Sept

3. The Bristol Hotel San Diego

Downtown San Diego

Alexandria

฿5,233

฿6,067 total

includes taxes & fees

3 Sept - 4 Sept

4. Westgate Hotel

Downtown San Diego

Chris

฿6,269

฿8,422 total

includes taxes & fees

13 Sept - 14 Sept

5. Hotel Republic San Diego, Autograph Collection

Downtown San Diego

Juan

฿5,447

฿7,860 total

includes taxes & fees

27 Sept - 28 Sept

Presidential Suite, 2 Bedrooms | Living room

6. Alma San Diego Downtown, a Tribute Portfolio Hotel

Downtown San Diego

Lauryn

฿6,256

฿8,604 total

includes taxes & fees

6 Sept - 7 Sept

7. Hercor Hotel - Urban Boutique

Chula Vista

Mahmoud

฿3,282

฿3,616 total

includes taxes & fees

20 Sept - 21 Sept

8. The Pearl Hotel

Point Loma

Christine

฿5,322

฿6,011 total

includes taxes & fees

28 Sept - 29 Sept

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Top San Diego Hotel Reviews

Hard Rock Hotel San Diego

10/10 Excellent

"My room was spectacular and spacious."

Bay Club Hotel & Marina

10/10 Excellent

"nothing specific , but several room service remnants stayed in the hallway over night Security could do a walk through at 2:AM"

The Dana on Mission Bay

10/10 Excellent

"We stayed in a double queen junior suite with Bay view. Stunning. We came in at the height of a heat wave with major humidity which made the room damp. Staff were amazing, brought up.fans, provided free drink tickets. The pools were beautiful. Onsite paddle board rental. Discount tickets to the zoo Everyone was incredible. 10/10"

Frequently asked questions

Looking for a unique accommodation option for your visit to San Diego?

If you want to find a smaller hotel with top-notch service, a personal feel, and great ambiance, a boutique hotel may be exactly what you want. Choose from 10 boutique-style accommodation options in San Diego to find a property that captures the local spirit of this destination.

What's the best boutique-style hotel in San Diego?

Keating Hotel By At Mine Hospitality is a favourite hotel with our travellers looking for stylish accommodation, and features 35 guestrooms, free WiFi and plasma TVs. Pacific Terrace Hotel and Westgate Hotel are two other options for a boutique stay.

How many boutique hotels will I be able to find in San Diego?

Expedia has 10 boutique hotels in San Diego.

What's there to see and do in San Diego?

Visitors speak positively about this destination's breathtaking beach views, art galleries and acclaimed theatres. Top activities and sights around San Diego include Petco Park, San Diego Zoo and Mission Bay. While you're here, make sure you don't miss Mission Beach, Port of San Diego and Hotel del Coronado.

What kind of weather should I plan for when I travel to San Diego?

Having a good idea of the weather in San Diego will help you enjoy your stay to the fullest. The hottest months are usually August and September, with an average temperature of 22°C, while the coldest months are February and January, with an average of 14°C. Average annual precipitation for San Diego is 328 mm.

What's the best way to get to my boutique hotel in San Diego?

You have a few options for travelling to and around San Diego. The closest major airport is San Diego, CA (SAN-San Diego Intl.), which is located 2.4 mi (3.9 km) from the heart of the city, but San Diego, CA (MYF-Montgomery Field) may also be an option. You can access metro transport at Civic Center Station, Civic Center Station and 5th Avenue Station. If you want to travel outside the city, hop on a train from San Diego Santa Fe Depot, Old Town Transit Center or San Diego Coaster Sorrento Valley Station.

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Treat yourself

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Check availability on San Diego Boutique Hotels

Our top choices for San Diego boutique hotels

1. Keating Hotel By At Mine Hospitality

2. Hotel Indigo San Diego-Gaslamp Quarter by IHG

3. The Bristol Hotel San Diego

4. Westgate Hotel

5. Hotel Republic San Diego, Autograph Collection

6. Alma San Diego Downtown, a Tribute Portfolio Hotel

7. Hercor Hotel - Urban Boutique

8. The Pearl Hotel

9. Tower23 Hotel

10. Pacific Terrace Hotel

Top San Diego Hotel Reviews

Hard Rock Hotel San Diego

Bay Club Hotel & Marina

The Dana on Mission Bay

Frequently asked questions

Explore a world of travel with Expedia

Search Boutique Hotels in San Diego

Change your mind

Treat yourself

Be picky

Check availability on San Diego Boutique Hotels

Our top choices for San Diego boutique hotels

1. Keating Hotel By At Mine Hospitality

2. Hotel Indigo San Diego-Gaslamp Quarter by IHG

3. The Bristol Hotel San Diego

4. Westgate Hotel

5. Hotel Republic San Diego, Autograph Collection

6. Alma San Diego Downtown, a Tribute Portfolio Hotel

7. Hercor Hotel - Urban Boutique

8. The Pearl Hotel

9. Tower23 Hotel

10. Pacific Terrace Hotel

Top San Diego Hotel Reviews

Hard Rock Hotel San Diego

Bay Club Hotel & Marina

The Dana on Mission Bay

Frequently asked questions

Explore a world of travel with Expedia