A seaside view with a white umbrella and wicker chairs.

Search Boutique Hotels in Heraklion

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Heraklion Boutique Hotels

Tonight
26 Sep - 27 Sep
Tomorrow
27 Sep - 28 Sep
Next weekend
2 Oct - 4 Oct
In two weeks
9 Oct - 11 Oct

Our top choices for Heraklion boutique hotels

A waterfront restaurant with a view of the sea and a historic fort.
An outdoor dining area with tables set for a meal, overlooking a cityscape at night.
A marina at dusk with boats docked, a prominent building, and a calm waterfront.
A modern hotel entrance with glass doors, a potted plant, and a red interior visible through the glass.

1. Lato Boutique Hotel

Lato Boutique Hotel
Heraklion
United States
ISTVAN
฿3,189
฿4,010 total
includes taxes & fees
25 Oct - 26 Oct
Lato Boutique Hotel
A modern bedroom with a large bed, a glass partition, a view of the city, and a small wooden table.
A rooftop terrace with a wooden deck, a hot tub, and seating areas.
A modern restaurant with a long dining table, multiple chairs, and a large window with natural light.
A modern boutique hotel with a neon sign, large glass windows, and a visible entrance.

2. Dom Boutique Hotel

Dom Boutique Hotel
Heraklion
United States
Lisa
฿4,543
฿5,552 total
includes taxes & fees
6 Oct - 7 Oct
Dom Boutique Hotel
A modern outdoor lounge area with a pool, wooden furniture, and a view of the sea.
A modern living space with a sofa, a dining table with chairs, a hanging light fixture, and large windows.
A modern hotel room with a bed, desk, and seating area.
An outdoor dining area with wooden tables and chairs, a stone wall bar, and a pool in the background.

3. Casa Blu - Adults Only by Checkin

Casa Blu - Adults Only by Checkin
Hersonissos
France
Elsa Janine Berbiche
฿4,049
฿4,990 total
includes taxes & fees
13 Oct - 14 Oct
Casa Blu - Adults Only by Checkin
A modern rooftop terrace with a palm tree, a bar area, and a view of the cityscape.
A spacious dining area with large windows, wooden tables, and chairs, and a buffet with various food items.
A modern hotel with a reception area, a staircase, and a pool area.
A modern hotel with a rooftop pool area, multiple lounge chairs, and a glass-enclosed pool.

4. Axel Beach Crete - Adults Only

Axel Beach Crete - Adults Only
Hersonissos
Germany
Marvin
฿2,105
฿2,776 total
includes taxes & fees
25 Oct - 26 Oct
Axel Beach Crete - Adults Only
An outdoor seating area with wooden furniture and a thatched roof structure, overlooking the sea.
A multi-story hotel with a swimming pool, outdoor seating, and balconies.
A coastal area with a pier extending into the sea, boats docked, and buildings in the background.
An outdoor bar area with a pool table, wooden chairs, and a thatched roof.

5. Nostos Beach Boutique Hotel

Nostos Beach Boutique Hotel
Mylopotamos
United Kingdom
Simon
฿3,151
฿3,967 total
includes taxes & fees
9 Oct - 10 Oct
Nostos Beach Boutique Hotel
A modern room with a large sliding glass door leading to a balcony with two sun loungers and a table.
A modern hotel lobby with a reception desk, seating area, and large windows offering views of the outdoors.
A poolside area with lounge chairs and a table, overlooking the sea.
A hotel room with a bed, a TV mounted on the wall, a black console table, and a view of the ocean through sheer curtains.

6. Castello Boutique Resort & Spa - Adults Only

Castello Boutique Resort & Spa - Adults Only
Agios Nikolaos
United States
Lisa
฿5,347
฿6,658 total
includes taxes & fees
27 Sept - 28 Sept
Castello Boutique Resort & Spa - Adults Only
A beach with clear turquoise water, rocky shoreline, and distant buildings.
A modern hotel room with a large bed, a wooden headboard, a desk with a phone, a small table with a bottle and glass, a blue chair, and a TV on the wall.
A person in a white robe standing by a balcony with a view of the sea and greenery.
A modern two-story building with a glass-enclosed upper level, a swimming pool with lounge chairs, and a well-lit interior.

7. Harma Boutique Hotel

Harma Boutique Hotel
Hersonissos
United Kingdom
Helen
฿2,014
฿2,674 total
includes taxes & fees
10 Oct - 11 Oct
Harma Boutique Hotel
A pool area with lounge chairs and palm trees, overlooking the ocean.
A modern hotel room with a balcony overlooking the sea, a sofa, two chairs, and a small table.
A modern hotel room with a large bed, a desk, and a balcony with a view of the sea.
A beachside hotel with multiple balconies, palm trees, and beach chairs.

8. Riviera Beach Hotel

Riviera Beach Hotel
Hersonissos
United Kingdom
michelle
฿5,712
฿6,694 total
includes taxes & fees
26 Oct - 27 Oct
Riviera Beach Hotel
A modern hotel pool area with lounge chairs and umbrellas, a bar, and a view of mountains.
A restaurant with stone walls, large windows, and outdoor tropical plants. Tables are set with wine glasses and plates.
A person standing near a palm tree, wearing a hat and a pink top, with a black bag.
A bar area with a green bar counter, black bar stools, and overhead pendant lights.

9. Angela Suites Boutique Hotel

Angela Suites Boutique Hotel
Agios Nikolaos
Sweden
Arvid
฿3,516
฿4,564 total
includes taxes & fees
24 Oct - 25 Oct
Angela Suites Boutique Hotel
A balcony with a view of a marina and the sea.
A coastal building with multiple balconies, a staircase, and a view of the sea.
A multi-story hotel with balconies, a swimming pool, and a view of the mountains.
A modern kitchen with a wooden ceiling, a dining area with a table and chairs, and a sofa facing a large window with a view of the sea.

10. Minos Boutique Hotel Agia Galini

Minos Boutique Hotel Agia Galini
Agios Vasileios
Canada
Jean-Marc
฿3,773
฿4,475 total
includes taxes & fees
27 Sept - 28 Sept
Minos Boutique Hotel Agia Galini
View all properties

Top Heraklion Hotel Reviews

Olive Green Hotel

Olive Green Hotel

10/10 Excellent
"The property has a good location, close to nice restaurants. Driving a car on Crete is dodgy. The breakfast was very good."
Randall 2-night trip
Posted 1 day ago
Olive Green Hotel
Lato Boutique Hotel

Lato Boutique Hotel

10/10 Excellent
"All good no complains close to everything walking distance"
Shooshan 1-night trip
Posted 5 days ago
Lato Boutique Hotel

Frequently asked questions

What's the best boutique-style hotel in Heraklion?
Lato Boutique Hotel is a favourite hotel with our travellers looking for stylish accommodation, and features 79 guestrooms, free WiFi and a terrace. If you'd prefer to stay at a boutique hotel, you can also take a look at Dom Boutique Hotel.
What's there to see and do in Heraklion?
Visitors speak positively about this destination's major shopping centres, top museums and interesting historical sites. Activities and attractions to experience around Heraklion include Heraklion Port, Heraklion Loggia and Heraklion Town Hall. You might also like to explore more of the area and take in additional sights like Lions Square, Heraklion Archaeological Museum and Historical Museum of Crete while you're here.
What kind of weather should I plan for when I travel to Heraklion?
Getting an idea of what to expect from the weather in Heraklion is important when planning your trip. The hottest months are usually July and August, with an average temperature of 25°C, while the coldest months are January and February, with an average of 13°C. Average annual precipitation for Heraklion is 350 mm.
What's the best way to get to my boutique hotel in Heraklion?
You have a few options for travelling to and around Heraklion. The closest major airport is Heraklion (HER-Nikos Kazantzakis), which is located 2.3 mi (3.7 km) from the heart of the city. If you'd like to explore around the area, you may want a rental car for your journey.