Top Guest Houses in Nagasaki Prefecture in 2026

A narrow street lined with shops and signs, including a flower shop and a restaurant.

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Nagasaki Prefecture Accommodation: Most Popular Cities to Stay

A brightly lit street with a wooden building adorned with lights and signs, a staircase, and a tree.

Our top choices for Nagasaki Prefecture guest houses

A room with tatami flooring, a low table, and a television.

1. Kahan no Yado Karatsu Castle

Karatsu

Peter

฿2,211 total

9 Sept - 10 Sept

A traditional Japanese room with tatami flooring, a futon bed, a wooden chair, and a sliding shoji screen.

2. Chatamago

Nagasaki

฿1,433 total

10 Sept - 11 Sept

A traditional Japanese building with multiple floors, surrounded by a pond and trees.

3. Ohana

Yanagawa

Loyd

฿11,105 total

1 Oct - 2 Oct

A modern living room with a sectional sofa, a wooden coffee table, and a large window providing natural light.

4. GRAND BASE Nagasaki Chukagai

Nagasaki Chinatown

"What a perfect location for experiencing the city of Nagasaki. We were right located near the main area of Nagasaki Chinatown. We were surrounded by convenience stores and a very large number of restaurants either small privately owned to chain restaurants. Just generally shopping galor. There’s an and a very large number of restaurants either small privately owned to chain restaurants. There’s a small fish market right across the bridge. A barber next-door.Although there is no on-site parking,...

shari

฿2,990 total

14 Sept - 15 Sept

A traditional tatami room with a tatami mat floor, a glass table, a television, a large vase, and a framed portrait on the wall.

5. Guesthouse Arita

Arita

Daniel

฿2,234 total

13 Sept - 14 Sept

A room with tatami flooring, a low table, and a view of a garden through large windows.

6. Guesthouse Tsuki ga Kirei desu ne

Chuo Ward

Samuel

฿1,596 total

16 Sept - 17 Sept

A boat docked at a pier with passengers and a red boat nearby.

7. Hatago

Yanagawa

"古民家を素敵に改装されていて、昔ながらの和室に泊まるユニークな体験ができました。お風呂、トイレは最新&お洒落に改装されていて、とても快適です。部屋はシンプルですが、共有スペースにはポットやお茶、コーヒー等が用意されていて、部屋でほっこりできました。寝心地が良いお布団で、ぐっすり眠れました。朝食は、野菜たっぷり、お米つやつや。お味噌汁もとても美味しかったです。"

Rom

A traditional Japanese building with a wooden exterior, stone pathway, and a large water wheel.

8. Temple Stay Tsushima Seizanji

Tsushima

Noriyasu

A modern bedroom with a large bed, a seating area, and a view of the outdoors.

9. Goto Islands Hotel SOUx

Goto

"One of a kind hotel. I believe there are only 2 rooms in the property. The owner met me when I checked in and explained how to lower the blinds facing the street as the shower and toilet are facing the street. Well designed in general but it took me awhile to locate light swithces. The owner helped me book a nearby restaurant Motontoko where the owner chef is a fisherman who serves the fish he caught that day. "

Kiyoko

฿6,679 total

9 Sept - 10 Sept

A traditional Japanese building with a tiled roof, wooden doors, and a small porch area.

10. Minshuku Nishidomari

Tsushima

Man Jae

11. GuestHouse & Cafe Yamaboushi - Hostel

Tsushima

12. ASOBIYA HOUSE IKI

Iki

"釣りには最高の宿です！調理器具も揃っていて、釣具などのレンタルもあるので手ぶらでも来れます。自由に使えるキッチンがあるので釣ってきた魚は捌いてその場で食べれます。リビングでは宿に泊まってる他の人と一緒に夜ご飯を食べたりして楽しかったです。薪暖炉もあって眺めながら晩酌していい思い出が出来ました。個室なのでプライベート空間で良かったです。裏庭もあるみたいなので今度はそこでキャンプもしてみたいと思います！ "

Jei

A wooden staircase with a handrail, leading to a room with a wooden ceiling and a door at the end.

13. TINY HOTEL YADORIGI KAMIGOTO

Shinkamigoto

Shigeomi

14. Midori Guest House

Tsushima

฿2,424 total

27 Sept - 28 Sept

A room with a large window offering a view of a lush garden. There is a table with two chairs and a small table with cups.

15. Yanagawa Hakuryu Soh

Yanagawa

notsu

A residential area with multi-story buildings, a paved driveway, and various trees and shrubs.

16. bamboohouse

Goto

Kazumi

17. Watanabe Minpaku

Nagasaki

タツエ

A traditional Japanese-style room with tatami flooring, a low table, and two chairs.

18. Hotel Shunkeiya

Takeo

฿5,393 total

7 Sept - 8 Sept

A serene garden with a clear water feature, wooden structures, and lush greenery.

19. Yushuku Seiryuu

Ureshino

A modern building with a sloped roof and a stone retaining wall.

20. Hostel Sanoyabashi

Tsushima

฿2,203 total

13 Sept - 14 Sept

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Top Nagasaki Prefecture Hotel Reviews

Nagasaki Marriott Hotel

10/10 Excellent

"Very modern, spacious, and clean, conveniently located next to Nagasaki Station"

Cuore Nagasaki EkiMae

8/10 Good

"Cuore Nagasaki Ekimae is a standard Japanese hotel. My room was a reasonable size. The hotel was very clean and the staff were helpful. The best thing about it is it's proximity to the train station, the bus station and a tram stop. The tram gives you easy access to the citys attractions. It is also very close to a lot of shopping options and restaurants"

Hotel Rotterdam Huis Ten Bosch

8/10 Good

"Breakfast was limited to 1 main choice and allowed one piece of meat, either mackerel , chicken or sausage. The bread was big so we should be allowed to take more proteins. It should not restricted to 1 piece. Other than that, hotel was in a good location nearby to Huis Ten Bosch."

Find out more about Nagasaki Prefecture

Nagasaki Prefecture Guest Houses information

Number of reviews	364
Accommodation	26 Guest Houses
Lowest Price	฿1,433
Highest Price	฿11,105

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Book Guest Houses in Nagasaki Prefecture on Expedia.co.jp

Guest Houses in Nagasaki Prefecture

Change your mind

Treat yourself

Be picky

Check prices for these dates

Nagasaki Prefecture Accommodation: Most Popular Cities to Stay

Nagasaki

Our top choices for Nagasaki Prefecture guest houses

1. Kahan no Yado Karatsu Castle

2. Chatamago

3. Ohana

4. GRAND BASE Nagasaki Chukagai

5. Guesthouse Arita

6. Guesthouse Tsuki ga Kirei desu ne

7. Hatago

8. Temple Stay Tsushima Seizanji

9. Goto Islands Hotel SOUx

10. Minshuku Nishidomari

11. GuestHouse & Cafe Yamaboushi - Hostel

12. ASOBIYA HOUSE IKI

13. TINY HOTEL YADORIGI KAMIGOTO

14. Midori Guest House

15. Yanagawa Hakuryu Soh

16. bamboohouse

17. Watanabe Minpaku

18. Hotel Shunkeiya

19. Yushuku Seiryuu

20. Hostel Sanoyabashi

Top Nagasaki Prefecture Hotel Reviews

Nagasaki Marriott Hotel

Find out more about Nagasaki Prefecture

Nagasaki Prefecture Guest Houses information

Explore a world of travel with Expedia