Top Guest Houses in Nagasaki Prefecture in 2026

A narrow street lined with shops and signs, including a flower shop and a restaurant.

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Nagasaki Prefecture Accommodation: Most Popular Cities to Stay

A brightly lit street with a wooden building adorned with lights and signs, a staircase, and a tree.

Our top choices for Nagasaki Prefecture guest houses

A room with tatami flooring, a low table, and a television.

1. Kahan no Yado Karatsu Castle

Karatsu Castle Area

Peter

฿2,515 total

29 Oct - 30 Oct

A room with tatami flooring, a low table, and a view of a garden through large windows.

2. Guesthouse Tsuki ga Kirei desu ne

Chuo Ward

Samuel

฿1,798 total

28 Oct - 29 Oct

A traditional Japanese room with tatami flooring, a futon bed, a wooden chair, and a sliding shoji screen.

3. Chatamago

Nagasaki

KOUKI

฿1,466 total

31 Oct - 1 Nov

A traditional tatami room with a tatami mat floor, a glass table, a television, a large vase, and a framed portrait on the wall.

4. Guesthouse Arita

Arita

Daniel

A traditional Japanese building with multiple floors, surrounded by a pond and trees.

5. Ohana

Yanagawa

Loyd

฿11,343 total

28 Oct - 29 Oct

A modern living room with a sectional sofa, a wooden coffee table, and a large window providing natural light.

6. GRAND BASE Nagasaki Chukagai

Nagasaki Chinatown

"What a perfect location for experiencing the city of Nagasaki. We were right located near the main area of Nagasaki Chinatown. We were surrounded by convenience stores and a very large number of restaurants either small privately owned to chain restaurants. Just generally shopping galor. There’s an and a very large number of restaurants either small privately owned to chain restaurants. There’s a small fish market right across the bridge. A barber next-door.Although there is no on-site parking,...

shari

฿2,841 total

18 Oct - 19 Oct

A modern bedroom with a large bed, a seating area, and a view of the outdoors.

7. Goto Islands Hotel SOUx

Goto

"One of a kind hotel. I believe there are only 2 rooms in the property. The owner met me when I checked in and explained how to lower the blinds facing the street as the shower and toilet are facing the street. Well designed in general but it took me awhile to locate light swithces. The owner helped me book a nearby restaurant Motontoko where the owner chef is a fisherman who serves the fish he caught that day. "

Kiyoko

฿7,033 total

12 Nov - 13 Nov

A boat docked at a pier with passengers and a red boat nearby.

8. Hatago

Yanagawa

"古民家を素敵に改装されていて、昔ながらの和室に泊まるユニークな体験ができました。お風呂、トイレは最新&お洒落に改装されていて、とても快適です。部屋はシンプルですが、共有スペースにはポットやお茶、コーヒー等が用意されていて、部屋でほっこりできました。寝心地が良いお布団で、ぐっすり眠れました。朝食は、野菜たっぷり、お米つやつや。お味噌汁もとても美味しかったです。"

Rom

A modern building with a sloped roof and a stone retaining wall.

9. Hostel Sanoyabashi

Tsushima

yong se

฿2,208 total

11 Nov - 12 Nov

A traditional Japanese building with a tiled roof, wooden doors, and a small porch area.

10. Minshuku Nishidomari

Tsushima

Man Jae

A traditional Japanese building with a wooden exterior, stone pathway, and a large water wheel.

11. Temple Stay Tsushima Seizanji

Tsushima

Noriyasu

A wooden staircase with a handrail, leading to a room with a wooden ceiling and a door at the end.

12. TINY HOTEL YADORIGI KAMIGOTO

Shinkamigoto

Shigeomi

13. Midori Guest House

Tsushima

฿2,485 total

15 Nov - 16 Nov

14. GuestHouse & Cafe Yamaboushi - Hostel

Tsushima

15. ASOBIYA HOUSE IKI

Iki

"釣りには最高の宿です！調理器具も揃っていて、釣具などのレンタルもあるので手ぶらでも来れます。自由に使えるキッチンがあるので釣ってきた魚は捌いてその場で食べれます。リビングでは宿に泊まってる他の人と一緒に夜ご飯を食べたりして楽しかったです。薪暖炉もあって眺めながら晩酌していい思い出が出来ました。個室なのでプライベート空間で良かったです。裏庭もあるみたいなので今度はそこでキャンプもしてみたいと思います！ "

Jei