Search Hotels in Mission Bay, San Diego

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Our top choices for Mission Bay hotels

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,430 reviews)
"Staff were very friendly and accommodating The resort was beautiful and location was amazing"
United States
Valerie
The price is ฿6,523
฿9,232 total
includes taxes & fees
10 May - 11 May
San Diego Mission Bay Resort

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,556 reviews)
"Everything in the hotel is especial recommend 100% amazing place familiar, best place for relaxing "
United States
Rolando
The price is ฿6,820
฿9,574 total
includes taxes & fees
10 May - 11 May
Paradise Point Resort & Spa

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,625 reviews)
"Great hotel with great staff and amenities. Great location for a San Diego get away."
United States
Donald
The price is ฿5,868
฿8,479 total
includes taxes & fees
10 May - 11 May
Hyatt Regency Mission Bay Spa and Marina

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,309 reviews)
"My family and I had a great time, friendly staff "
United States
Brandon
The price is ฿5,868
฿7,498 total
includes taxes & fees
10 May - 11 May
The Dana on Mission Bay

Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very good, (3,502 reviews)
"Great stay and family friendly "
United States
Gregory
The price is ฿4,098
฿6,368 total
includes taxes & fees
25 May - 26 May
Sheraton San Diego Resort

Best Western Americana Inn

Best Western Americana Inn
2.5 star property
28.6 km from Mission Bay
9.0 out of 10, Wonderful, (1,266 reviews)
"Clean room, nice staff, a simple breakfast, and free parking on site."
United States
Nicole
The price is ฿4,010
฿4,561 total
includes taxes & fees
6 May - 7 May
Best Western Americana Inn

Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,053 reviews)
"It was clean and convenient to the airport."
United States
Joey L
The price is ฿4,622
฿5,313 total
includes taxes & fees
4 May - 5 May
Holiday Inn Express San Diego Airport - Old Town by IHG

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
6.8 km from Mission Bay
9.2 out of 10, Wonderful, (3,555 reviews)
"Great place and walking distance to many different places. Stayed before getting on a cruise."
United States
Lawrence
The price is ฿4,474
฿5,143 total
includes taxes & fees
11 May - 12 May
Bay Club Hotel & Marina

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2.3 km from Mission Bay
8.6 out of 10, Excellent, (2,037 reviews)
"Family friendly with many onsite activities and near by dinning options "
United States
samantha
The price is ฿5,871
฿8,570 total
includes taxes & fees
17 May - 18 May
Bahia Resort Hotel

Ramada by Wyndham San Diego Poway Miramar

Ramada by Wyndham San Diego Poway Miramar
2.0 star property
24.7 km from Mission Bay
7.0 out of 10, Good, (1,003 reviews)
"Quick to checking in nice staff and breakfast was good there was plenty of parking lot to park"
United States
Ruffa Regina
The price is ฿3,052
฿3,357 total
includes taxes & fees
10 May - 11 May
Ramada by Wyndham San Diego Poway Miramar

Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.2 out of 10, Wonderful, (1,861 reviews)
"Nice staff, so clean, very pleasant stay."
United States
Rachel
The price is ฿5,140
฿5,898 total
includes taxes & fees
20 May - 21 May
Old Town Inn

Pleasant Inn

Pleasant Inn
2.5 star property
8 km from Mission Bay
8.6 out of 10, Excellent, (1,381 reviews)
" Clean room friendly staff"
Canada
Laurent
The price is ฿3,065
฿3,517 total
includes taxes & fees
7 May - 8 May
Pleasant Inn

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,205 reviews)
"Room was clean hotel was close to beach & restaurant "
United States
Andrea
The price is ฿3,901
฿4,484 total
includes taxes & fees
3 May - 4 May
Wyndham Garden San Diego Near SeaWorld

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,058 reviews)
"Great hotel and in a great location "
United States
Danielle
The price is ฿3,425
฿3,937 total
includes taxes & fees
11 May - 12 May
GreenTree Inn San Diego Mission Bay

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
5 km from Mission Bay
9.2 out of 10, Wonderful, (1,306 reviews)
"Very clean and very friendly staff. Love the bar in the lobby"
United States
William
The price is ฿5,806
฿6,673 total
includes taxes & fees
3 May - 4 May
Courtyard by Marriott San Diego Airport/Liberty Station

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
5.6 km from Mission Bay
8.4 out of 10, Very good, (1,849 reviews)
"Very good breakfast offered; room was clean and comfortable; free parking; great area, close to downtown, Mission Beach and Liberty market. "
United States
Jeffrey
The price is ฿3,144
฿3,608 total
includes taxes & fees
3 May - 4 May
Best Western Yacht Harbor Hotel

Holiday Inn Express San Diego South - Chula Vista by IHG

Holiday Inn Express San Diego South - Chula Vista by IHG
2.5 star property
19.3 km from Mission Bay
9.4 out of 10, Exceptional, (1,118 reviews)
"Great hotel and breakfast "
United States
Sankara
The price is ฿4,152
฿4,567 total
includes taxes & fees
10 May - 11 May
Holiday Inn Express San Diego South - Chula Vista by IHG

HYATT house San Diego/Sorrento Mesa

HYATT house San Diego/Sorrento Mesa
3.0 star property
14 km from Mission Bay
9.0 out of 10, Wonderful, (1,004 reviews)
"Breakfast was delicious and staff friendly Room was clean and spacious."
United States
Rosa
The price is ฿6,195
฿7,121 total
includes taxes & fees
8 May - 9 May
HYATT house San Diego/Sorrento Mesa

Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,414 reviews)
"Friendly staff and decent place to stay "
United States
Dennis
The price is ฿4,087
฿4,698 total
includes taxes & fees
10 May - 11 May
Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,706 reviews)
"Great location, clean room plus friendly staffes."
United States
Alfred
The price is ฿5,656
฿6,502 total
includes taxes & fees
31 May - 1 Jun
Hampton Inn & Suites San Diego Airport Liberty Station
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Dog Beach and Ocean Beach Farmers Market.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
What's a favourite hotel to stay in Mission Bay?
Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include The Dana on Mission Bay and Hyatt Regency Mission Bay Spa and Marina.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighbourhood. Mission Beach, beach near Mission Bay Park and beach near Mission Bay are just a few of the places to visit in and around Mission Bay. When you're sightseeing in San Diego, Bahia Point Beach and Bay City Brewing Co. are also worth a stop.