The Best Hotels in Mission Hills, San Diego - 2026 Updated Prices

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Where to stay in Mission Hills

Find the best Mission Hills areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and USS Midway Museum are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

See properties

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

See properties

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

See properties

Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

See properties

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Mission and Pacific Beaches are top sights worth seeing.

See properties

Top Mission Hills Hotel Reviews

San Diego Mission Bay Resort

10/10 Excellent

"amazing room with great views , loved the pool area and how walkable everything was."

Days Inn by Wyndham San Diego Hotel Circle

10/10 Excellent

"My recent stay here was amazing! Staff is incredible and the facilities were clean. Received daily maid service. The hotel is not a luxury hotel (and pricing reflects that), but the staff behaves as though you are a VIP—to everyone. Parking is $20/night but so worth it because of extra security. I asked if I had trouble finding a spot what I should do. They explained one of the guards would help me. Never needed assistance finding a spot and was often parked right in front of my room. Despite the busy hotel with families, it was a quiet space. It is next to a highway, but do your research and pay premiums for hotels not near a highway, if highway noise is a problem for you. It was never intrusive to me even while sitting outside. The water in the shower was actually hot. The pool is clean and heated. The hot tub was awesome! There are several beautiful outdoor areas and 24 hour security patrols the parking lot. I had trouble sleeping (not the hotel’s fault—I just don’t sleep well) and I felt completely safe sitting in those well lit areas to wind down at 2 am. At one point a security officer asked if I was okay to check in on me. There were a few unhoused people but they were not dangerous and did not stay very long, I don’t know if security quietly sent them on their way. It is San Diego, there is a large unhoused population and complete control on any property would be difficult. A vent above the kitchen stove would be helpful. Other than that an amazing stay. Thank you!"

The Dana on Mission Bay

8/10 Good

"I’ve been coming here for years. It’s right on the bay. You can leave your room and walk along the water. The property has a very tropical feel to it. Lots of green grass and beautiful lush trees everywhere. The main pool is great. Has a huge decently warmer pool and nice sized hot tub. Towels available at the pool too. Check in is always easy and quick. I have noticed over the last few years that the rooms haven’t been updated much and they could use it just a little bit. It’s still very nice but could use a pick me up. Also, the quality of the food at the onsite restaurant could use a refresh. Other than that, I love this place and will be back again. Nice staff. Great location. Big property."

Frequently asked questions

What's it like in Mission Hills?

Travellers to San Diego's Mission Hills neighbourhood will be sure to enjoy a stay here. Looking for sights you might find in a travel guide about Mission Hills? Consider a visit to Hotel Circle while you're in the neighbourhood.

Where is the best place to stay in Mission Hills?

Based on Expedia customer reviews, Holiday Inn Express San Diego Airport - Old Town by IHG is the highest ranked property in Mission Hills. This hotel offers free breakfast and an outdoor pool. Another top choice in the area is Candlewood Suites San Diego by IHG.

How many hotels should I expect to find in the Mission Hills area?

Expedia has 66 hotels and other accommodation options in Mission Hills to choose from, making this an ideal home base for exploring the greater San Diego area.

If I need to cancel my hotel reservation in Mission Hills, will I receive a refund?

Yes, the majority of hotel bookings are fully refundable as long as you cancel before the hotel's cancellation deadline, which is usually within 24-48 hours of your arrival date. If you have a non-refundable reservation, it may still be possible to cancel it and get a refund within a 24-hour period of booking. Enter dates in and click on "Search", then use the "fully refundable" filter to review the best options available in Mission Hills.

What is there to do around this San Diego neighbourhood?

Spend some time exploring the natural setting of Mission Hills with a visit to Presidio Park and Heritage Park. When you're sightseeing in San Diego, San Diego Zoo and USS Midway Museum are also worth a stop.

How can I get around Mission Hills and the greater San Diego area?

Ready to get out and explore the city? Washington Street Station is the closest metro station.

Explore a world of travel with Expedia

More ways to book

Book Hotels in Mission Hills on Expedia.com

Search Hotels in Mission Hills, San Diego

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Our top choices for Mission Hills hotels

Holiday Inn Express San Diego Airport - Old Town by IHG

Candlewood Suites San Diego by IHG

Best Western Americana Inn

Crowne Plaza San Diego - Mission Valley by IHG

Lafayette Hotel & Club

Holiday Inn Express San Diego South - Chula Vista by IHG

Comfort Inn Chula Vista San Diego South

Sheraton San Diego Resort

Wyndham San Diego Bayside

Best Western San Diego Pacific Beach/Mission Bay

Ramada by Wyndham San Diego Poway Miramar

Wyndham Garden San Diego Near SeaWorld

Best Western San Diego/Miramar Hotel

San Diego Mission Bay Resort

Marriott Marquis San Diego Marina

The Alcala Hotel Mission Valley/Seaworld

Hard Rock Hotel San Diego

Hampton Inn & Suites San Diego Airport Liberty Station

Comfort Inn Sea World Area

Bahia Resort Hotel

Where to stay in Mission Hills

Downtown San Diego

Pacific Beach

Mission Beach

Gaslamp Quarter

Mission Bay

Top Mission Hills Hotel Reviews

San Diego Mission Bay Resort

Frequently asked questions

Explore a world of travel with Expedia