Search Boutique Hotels in Agios Ioannis

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Check prices for these dates

Tonight
4 Nov - 5 Nov
Tomorrow
5 Nov - 6 Nov
This weekend
6 Nov - 8 Nov
Next weekend
13 Nov - 15 Nov

Our top choices for Agios Ioannis boutique hotels

A modern room with a large sliding glass door leading to a balcony with two sun loungers and a table.

1. Castello Boutique Resort & Spa - Adults Only

Castello Boutique Resort & Spa - Adults Only
5.0 star property
Agios Nikolaos
9.0 out of 10, Wonderful, (97 reviews)
"Great location near the centre of Sisi, yet nice and quiet. Helpful friendly staff and well maintained hotel"
United Kingdom
philip
The price is ฿4,868
฿5,679 total
includes taxes & fees
5 Nov - 6 Nov
Castello Boutique Resort & Spa - Adults Only
A table with a glass of water, a cup, and sunglasses on a balcony overlooking a harbor with boats and a historic fort.

2. Lato Boutique Hotel

Lato Boutique Hotel
4.0 star property
Heraklion
8.8 out of 10, Excellent, (1,003 reviews)
"Very nice hotel, good on site restaurant, convenient to waterfront, walkable distance from bus station."
United States
Matthew
The price is ฿2,161
฿2,574 total
includes taxes & fees
1 Dec - 2 Dec
Lato Boutique Hotel
A modern bedroom with a large bed, a glass partition, a view of the city, and a small wooden table.

3. Dom Boutique Hotel

Dom Boutique Hotel
4.0 star property
Heraklion
9.4 out of 10, Exceptional, (374 reviews)
"Great hotel in a great location with great breakfast"
Australia
Graeme
The price is ฿2,866
฿3,376 total
includes taxes & fees
5 Nov - 6 Nov
Dom Boutique Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Agios Ioannis Hotel Reviews

A modern bedroom with a large bed, a glass partition, a view of the city, and a small wooden table.
Dom Boutique Hotel

Dom Boutique Hotel

Dom Boutique Hotel
Heraklion

10/10 Excellent

Good location in old town with handy car parking right in front.
United Kingdom
SYLVIE
Reviewed July 7, 2026
Dom Boutique Hotel

Frequently Asked Questions

What's the best boutique hotel in Agios Ioannis?

Paradise Island Villas is a favourite hotel with our travellers looking for stylish accommodation, and features 12 guestrooms, 2 outdoor pools and private pools.

What's there to see and do in Agios Ioannis?

After you've decided where you'd like to stay, figure out some fun things to do on your trip. Activities and attractions to experience around Agios Ioannis include Heraklion Port, Aquaworld Aquarium and Port of Hersonissos. Some other things you might want to enjoy include Historical Museum of Crete, Lychnostatis and Natural History Museum of Crete.

What kind of weather should I plan for when I travel to Agios Ioannis?

Getting an idea of what to expect from the weather in Agios Ioannis is important when planning your trip. The hottest months are usually August and July, with an average temperature of 25°C, while the coldest months are January and February, with an average of 13°C. Average annual precipitation for Agios Ioannis is 365 mm.

What's the best way to get to my boutique hotel in Agios Ioannis?

You have a few options for getting to Agios Ioannis. The closest major airport is Heraklion (HER-Nikos Kazantzakis), which is located 10.5 mi (16.9 km) from the heart of the city. If you'd like to explore around the area, you may want to rent a car for your trip.